| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_2862 |
|---|
| Symbol | |
|---|
| ID | 6310405 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 3079744 |
|---|
| End bp | 3081111 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 642651586 |
|---|
| Product | type I secretion membrane fusion protein, HlyD family |
|---|
| Protein accession | YP_001925552 |
|---|
| Protein GI | 188582107 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCGA CACTTGCCCC CGCACCCCTT GCCCCCGCAC CCCTGAGCGG CTTCGCCCCG
GCGCTGCCGC GGCCCGCCGC GCACGGCTCG ATCCGGCGTC ATCTCGCCGT CGCGCTCGGC
CTCTCGGTTG CCCTGGTCTT CGGCGTCGGC GGCTGGGCCA CCTTCACCGA CATCTCCGCC
GCGGTGATCG CGCCGGGCCA GCTCGTCGTC GAGACCGACG TGAAGAAGGT CCAGCATCCC
ACCGGCGGTG TCGTCGGCGA GTTGCTGGCG CGCGAGGGCC AGCGGGTCGC CGCCGGCGAC
GTGCTGATCC GCCTCGACGA GACCCAGACC CGGGCCAACC TCGACATCGT GCTCAAGGCC
ATGGACGAGC TCTCCGCCCG CCGCGCCCGC GACGAGGCCG AGCGCGATGG GCTGAAAACC
ATCACCTTCC CGCCCGACCT CGTCGCCCGC ATCGACACCG ACCCGACCGT CGCCCGGCTG
ATCGACGGCG AATCGAGGCT GTTCGCAGCG CGCGTCGCTG GGCGCGAGGG CCAGAAGGCG
CAGCTGCGCG AGCGGGTCGA CCAGCTCCGC CAGGAGATCG CCGGCCTGAC CAAGCAGGCC
GCGGCCAAGG ACCGCGAGAT CAACCTGATC GGCCACGAAC TGACGGGCGT GCGCGACCTC
TATGCCAAGA ACCTCGTACC GCTCTCGCGG GTCACGGCGC TGGAGCGCGA CGCCGCCCGG
CTCGAGGGCG AGCGCGGCCA GCTCGTCGCC TCCACCGCTT CGGCGCGCGG CAAGATCGCC
GAGACCGAGC TGCAGATCAT CCAGATCGAC GGGGAGATGC GCACCGAGGT CGGCAAGGAT
CTGGCCGAGA TCCGCGGCAA GTGGTCGGAG CTGCGCGAGA AGCGCGTGGC GGCCGAGGAC
CAGCTCAAGC GGGTCGAGCT ACGCGCGCCG CAGGACGGCT TCGTGCACCA GATGAGCGTG
CACACGGTGG GCGGCCTCGT CGTGCCGAGC GAACCGGCGA TGCTGATCGT GCCGGCCTCC
GACCAGCTCC TCGTCGAGGT GCGGGTGCAG CCGCAGGACA TCGACAACGT GCGGGTCGGC
CAGAAAGCGG TTCTGCGGTT TGCCGCCTTC AACACGCGCA CGACGCCGGA GATCGACGGC
GAGGTGGTGC GGGTGTCCGC GGACGTGACC CAGGATCCCA AGACCGGGCA GAGCTACTAC
ACGGCGCGCA TCCGCATCCG GGAGGACCAG AAGGAGCGCC TGAAGGGCCT GCGGCTGGTT
CCGGGCATGC CGGTCGAGTC GTTCACCCAG ATCGGCGAGC GCTCGGTCCT GTCCTACCTC
ACCAAGCCGC TCACCGATCA GATCGCCAAA GCGTGGCGCG AGCGCTGA
|
|---|
| Protein sequence | MSSTLAPAPL APAPLSGFAP ALPRPAAHGS IRRHLAVALG LSVALVFGVG GWATFTDISA
AVIAPGQLVV ETDVKKVQHP TGGVVGELLA REGQRVAAGD VLIRLDETQT RANLDIVLKA
MDELSARRAR DEAERDGLKT ITFPPDLVAR IDTDPTVARL IDGESRLFAA RVAGREGQKA
QLRERVDQLR QEIAGLTKQA AAKDREINLI GHELTGVRDL YAKNLVPLSR VTALERDAAR
LEGERGQLVA STASARGKIA ETELQIIQID GEMRTEVGKD LAEIRGKWSE LREKRVAAED
QLKRVELRAP QDGFVHQMSV HTVGGLVVPS EPAMLIVPAS DQLLVEVRVQ PQDIDNVRVG
QKAVLRFAAF NTRTTPEIDG EVVRVSADVT QDPKTGQSYY TARIRIREDQ KERLKGLRLV
PGMPVESFTQ IGERSVLSYL TKPLTDQIAK AWRER
|
|---|
| |