| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_2848 |
|---|
| Symbol | |
|---|
| ID | 6310256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 3064917 |
|---|
| End bp | 3066455 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 642651572 |
|---|
| Product | phytoene desaturase |
|---|
| Protein accession | YP_001925538 |
|---|
| Protein GI | 188582093 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | [TIGR02734] phytoene desaturase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.984953 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.88934 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGACA AGCGCGTCAT CGTGATCGGC GCCGGCATCG GCGGGCTCGC CGCCGCGCTG
ACCCTCGCGG CTGCCGGCCT CGATGTGACG GTGTTGGAGC GCGCGGACCG GGTCGGCGGT
AAGATGCGCT CGGTGCCGGT CGGCGGGTCC GCGATCGAGG CCGGCCCGAC CGTCTTCACC
ATGCGGTGGG TGTTCGACGA ACTCTTCGAG GAAGCCGGTA CCAGTCTGGA GGCGGAAATC
GGGTTGCGGC CCGCTTCGCT TCTCGCACGG CATGCCTGGA GCGGACGCGA ACGCCTCGAC
CTGTTCGCCG ACGTCGCCGC ATCGGCGGAT GCCATCGCCG CCTTCGCCGG CCCGCGCGAG
GCGGAGGGCT ATCGCCGCTT CTGCGCCCGC GCGGCGGAGG TCTACCGCAC GCTGGAGGGA
CCCTTCATCC GCGCCGACCG GCCGAGCCCG GTCGATCTCG CCCAGCGCGT CGGCCTTGCG
GGGATCGGCA GCCTCTGGCG CATCCAGCCC TTCGCCACGC TGTGGTCGGC GCTCGGCGAG
TATTTTCGCG ATCTGCGCCT GCGTCAGCTC TTCGGGCGCT ACGCCACCTA TTGCGGCGCC
TCGCCGTTCG AGGCGCCGGC CACGCTGATG CTGGTCGCCC ATGTCGAGCA GGTGGGTGTC
TGGACCGTCG AGGGGGGATT GAGCCGACTG GCCGGCGCCG TCGCCGATCT GGCGATGCGC
CGCGGAGCCC GGATTCGCAC CGGCGCGCAT GTGGCGCGGA TCCTGACTGA CGGACACCGC
GTCGCCGGGG TCGAACTCGC CGACGGCGAG CGCATCGCCG CCGACGCGGT GATCGCCAAC
GCGGACGTCT CGGCCCTCGG CACGGGCCTG CTCGGCGCCG ACGTCATCCC GGCCGGAGAC
CGGATCCCGC CGCGCGAGCG CTCGCTCTCG GCGGTGACCT TCTGCATGAC GGCACGGGCG
CAGGGCTTCG GCCTCGCCCA TCACAGCGTG TTCTTCTCCG CCGACTACCG GTCAGAGTTC
GACGCGATCC TGCGCGGGCG CCGCCTGCCG CCGGACCCGA CCGTCTACGT CTGCGCACAG
GACCGGGACG GCGACGGCGG CCCCGCGCCC GGCGGGCCGG AACGCCTGCT GCTCCTCGTC
AACGCCCCGG CCGATGGCGG GGAACGTCCC TTCACTCCTC GGGAGATCGC CGCATGCGAG
ACGAACATCC TTCGCAAGCT CTCGGCCTGC GGCCTGACCC TAGAGCCGAC GGAGCAAGCG
ACGATCACGA CGCCGGACGG CTTCGCGGGG CTGTTTCCGG GGACGGGGGG CGCCCTCTAC
GGCCGGGCCT CGCACGGTTG GACGGCAACC TTCAAGCGGC CGGGGGCGCG GACGCGGGTG
CCGGGCCTCT ACCTCGCGGG GGGGAGCGTG CATCCGGGGC CGGGGGTGCC GATGGCGGCG
CAATCGGGCC GGCTCGCGGC GGCGGCACTG CGCGCGGACC TCGATTCGAC GGCGCGGTCG
CACAAGGCGG CTATGTCTGG TGGTACGTCG ATGCGGTGA
|
|---|
| Protein sequence | MTDKRVIVIG AGIGGLAAAL TLAAAGLDVT VLERADRVGG KMRSVPVGGS AIEAGPTVFT
MRWVFDELFE EAGTSLEAEI GLRPASLLAR HAWSGRERLD LFADVAASAD AIAAFAGPRE
AEGYRRFCAR AAEVYRTLEG PFIRADRPSP VDLAQRVGLA GIGSLWRIQP FATLWSALGE
YFRDLRLRQL FGRYATYCGA SPFEAPATLM LVAHVEQVGV WTVEGGLSRL AGAVADLAMR
RGARIRTGAH VARILTDGHR VAGVELADGE RIAADAVIAN ADVSALGTGL LGADVIPAGD
RIPPRERSLS AVTFCMTARA QGFGLAHHSV FFSADYRSEF DAILRGRRLP PDPTVYVCAQ
DRDGDGGPAP GGPERLLLLV NAPADGGERP FTPREIAACE TNILRKLSAC GLTLEPTEQA
TITTPDGFAG LFPGTGGALY GRASHGWTAT FKRPGARTRV PGLYLAGGSV HPGPGVPMAA
QSGRLAAAAL RADLDSTARS HKAAMSGGTS MR
|
|---|
| |