| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_2544 |
|---|
| Symbol | |
|---|
| ID | 6310119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 2768073 |
|---|
| End bp | 2769386 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 642651268 |
|---|
| Product | type I secretion membrane fusion protein, HlyD family |
|---|
| Protein accession | YP_001925236 |
|---|
| Protein GI | 188581791 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.110449 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.225812 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGC AGCGCCCTTG GGACATCCGC CGCTCCGTCC GGCGCCACCT CGTCCTGAGC
CTGGCGGCCG CCGCCCTGCT CACCGTCGGC CTCGGGGGGT GGGCGGCCAC CACCGAGCTC
GCCGGCGCTG TCGTGGCACC GGGGACGCTC GTCGTCGATT CCTTCGTCAA GAAGGTGCAG
CACCCCACCG GAGGCGTGGT GGGCGAGTTG CGGGTCCGGG ACGGCGACCT CGTGCGCGCC
GGCCAGGTCG TCATGCGGCT GGACGAGACC GTGACCCGCG CCAACCTCGC CGTTGTCGAC
AAGAGCCTGG CCGAGCTGAC CGCGCGCCAG GGCCGCCTGG AGGCGGAACG CGACGGCGCC
CCCCGGGTCT CGTTCGCGGC CGTCCTCCGG GGCCGCGCCC AAGGCGACCC GGAGGCGGGG
AGGGTGATGG CAGGCGAGAC CCGGCTGTTC GAGCTGCGCC GGGACGCCCG CGCGGGCCAG
AAGGCGCAGC TGAAGGAGAG GACCGGCCAG CTCCGGGAGG AGATCCAGGG CCTGACGGGC
CAGATCGCCG GCAAGCGGCG CGAGACCGAG TTGATCAACC GCGAGCTCGA AGGCGTGCGC
GACCTCTGGC GCAAGAACCT GGTCCCCATC CAGCGCGTGA CCGCCCTGGA GCGCGACGCC
GCCCGCCTGG AGGGCGAGCA CGGGCAGCTC GTCGCCTCCG TCGCGCAGGC GAAGGGAAAG
ATCTCCGAAA CCGAGCTCCA GGTGATCCAG GTCGACCAGG ACCTGCGCAG CGAGGTGGCG
AAGGAGTTGA GCGAGGTGCA GGGCAAGATC GCCGAGCTCG TCGAGAAGCG GGTCGCGGCC
GAGGACCAGC TCAAGCGCAT CGACATCCGG GCCCCGCAGG ACGGCATGGT CCATCAACTC
GCCGTCCACA CCATCGGCGG GGTGGTCAGC CCGGGCGAAC CCATCATGCT GATCGTCCCG
AGGGCGGACA CGCTCGTGAT CGAGGCGAAG GTCGCCCCGA AGGACATCGA CCAGGTCCGG
CTCGGACAAA AGGCCGTGCT GCGCCTGACC GCGTTCAACC AGCGGACCAC CCCGGAGATC
GAGGGCACGG TCAGCCTCGT CGCCGCCGAC CAGATCACGG ACGAGAAGAC GGGCACGAGC
TTCTTCAAGG TCCACGTCAA GCCGGAACCG GACCACGTCG CGCGGCTCAA GGGGATCAAG
CTCGTGCCGG GCATGCCGGC CGAGGTTTTC ATCCAGACGG GCGAGCGGAC GGTGCTCTCC
TACCTGACGA AGCCCCTCAA CGATCAGGTC CGGCGGGCGT TCAAGGAAGA TTGA
|
|---|
| Protein sequence | MSAQRPWDIR RSVRRHLVLS LAAAALLTVG LGGWAATTEL AGAVVAPGTL VVDSFVKKVQ
HPTGGVVGEL RVRDGDLVRA GQVVMRLDET VTRANLAVVD KSLAELTARQ GRLEAERDGA
PRVSFAAVLR GRAQGDPEAG RVMAGETRLF ELRRDARAGQ KAQLKERTGQ LREEIQGLTG
QIAGKRRETE LINRELEGVR DLWRKNLVPI QRVTALERDA ARLEGEHGQL VASVAQAKGK
ISETELQVIQ VDQDLRSEVA KELSEVQGKI AELVEKRVAA EDQLKRIDIR APQDGMVHQL
AVHTIGGVVS PGEPIMLIVP RADTLVIEAK VAPKDIDQVR LGQKAVLRLT AFNQRTTPEI
EGTVSLVAAD QITDEKTGTS FFKVHVKPEP DHVARLKGIK LVPGMPAEVF IQTGERTVLS
YLTKPLNDQV RRAFKED
|
|---|
| |