Gene Mpop_2429 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpop_2429 
Symbol 
ID6313145 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium populi BJ001 
KingdomBacteria 
Replicon accessionNC_010725 
Strand
Start bp2639267 
End bp2640802 
Gene Length1536 bp 
Protein Length511 aa 
Translation table11 
GC content69% 
IMG OID642651158 
ProductRNA polymerase, sigma 54 subunit, RpoN 
Protein accessionYP_001925126 
Protein GI188581681 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0481489 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCTGC TGCAACGGCT CGAAATGCGC CAGGGTCAGT CCCTGGTGAT GACGCCGCAG 
CTGCTGCAGG CGATCAAGCT TCTCCAACTC TCGCAGCTCG ATCTGGCAGC CTATGTCGAT
GCCGAGCTGG AGCGCAATCC GCTGCTGGAG CGCACCGAGG GCGAGCCGGC CCCCGAGCGC
GATGTGCCGG AGGCGTCGGG CGACGGCGAC TACGAGGGCG GCGACGGGCC GGAGCCCGAG
GCATGGCTCG CCTCCGACAT GACGCCGAGC CGCAGCGAGA TCGAGGGCGA CCTCGACACG
CGCCTCGACA ACGTCTTTGC CGACGAGAAC CCCGCCCCGC GCGAGACCGC TTCCGGCGAC
ATGCTCTCGC TGACGCCCGC TCCCTACGGC AATACCGGCG GCAGCTTCGA CGGGGAGCTT
CCCGATTTCG AAGCGTCGCT GACCGCCGAG ACGAGCCTGC GCGAGCACCT TGCCGCCCAG
CTCGACCTCG CGACCCAGAA CCCGTCCGAC CGATTGATCG GCAGCTTCCT CATCGACGCG
GTGGACGATG CCGGCTACCT GCGCGAGGAC ATCGACGGTG TGGCCGAACG GTTCGGCGCC
TCGCTCGACG ACGTCGCCCG CATCCTGAAG CTCGTCCAGA CCTTCGACCC GCCGGGCGTG
GCTGCCCGCG ACCTCGCCGA ATGCCTCGCG ATCCAGCTCC GCGAGCAGGA CCGGTTCGAC
CCGGCGATGC AGGCTCTGGT CTCGCGCCTC GACCTCGTGG CGAAGCGCGA CTTTCCCGCC
CTGCGCCGCC TGTGCGGCGT GGACGACGAG GATCTCGTCG AGATGCTGGC CGAGATCCGC
CGGCTCGATC CGAAGCCCGG CCGCGCCTTC GGCGCGCACG CCGTCGAGGT GCTGGTCCCC
GACGTGTTCG TCCGCCCGGC ACCGGACGGC TCCTGGCTGA TCGAGCTGAA TTCCGAGACG
CTGCCGCGGG TGCTGGTCAA CCAGAGCTAC TATGCCCGCG TCTCCAAGGG GGCGGTGGCG
GACGGCGACA AGGCCTTCCT GTCCGAATGC CTGCAGACCG CCAACTGGCT CACCCGCAGT
CTGGAGCAGC GGGCACGCAC GATCCTGAAG GTCGCCACCG AGATCGTGCG CCAGCAGGAT
GCCTTCTTCC TGCACGGCGT CGCCCATCTG CGCCCGCTGA ACCTCAAGAC CGTCGCCGAG
GCGATCGGCA TGCACGAATC GACCGTCTCT CGGGTGACCT CCAACAAGTC GATCGGCACC
AGCCGCGGCA CCCTGGAGAT GAAGTACTTC TTCACCGCCG CGATCCCCGG CGCCGCCGGT
GCGGCGGCCC ATTCCTCGGA GGCCGTGCGC CACCGCATCA AGCAGCTCGT GGACGCGGAA
GCCGCCGACG TTCTGTCCGA CGACGCGCTG GTGCAGCGGC TGCGCGACGA GGGCGTCGAC
ATCGCGCGGC GCACCGTCGC CAAGTACCGG GAGTCGCTGC GTATCCCCTC TTCGATCGAT
CGCCGCCGGG CGAAGATGGC CGGCGCTCCC CGCTGA
 
Protein sequence
MSLLQRLEMR QGQSLVMTPQ LLQAIKLLQL SQLDLAAYVD AELERNPLLE RTEGEPAPER 
DVPEASGDGD YEGGDGPEPE AWLASDMTPS RSEIEGDLDT RLDNVFADEN PAPRETASGD
MLSLTPAPYG NTGGSFDGEL PDFEASLTAE TSLREHLAAQ LDLATQNPSD RLIGSFLIDA
VDDAGYLRED IDGVAERFGA SLDDVARILK LVQTFDPPGV AARDLAECLA IQLREQDRFD
PAMQALVSRL DLVAKRDFPA LRRLCGVDDE DLVEMLAEIR RLDPKPGRAF GAHAVEVLVP
DVFVRPAPDG SWLIELNSET LPRVLVNQSY YARVSKGAVA DGDKAFLSEC LQTANWLTRS
LEQRARTILK VATEIVRQQD AFFLHGVAHL RPLNLKTVAE AIGMHESTVS RVTSNKSIGT
SRGTLEMKYF FTAAIPGAAG AAAHSSEAVR HRIKQLVDAE AADVLSDDAL VQRLRDEGVD
IARRTVAKYR ESLRIPSSID RRRAKMAGAP R