Gene Mpop_2235 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpop_2235 
Symbol 
ID6313370 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium populi BJ001 
KingdomBacteria 
Replicon accessionNC_010725 
Strand
Start bp2387818 
End bp2388546 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content72% 
IMG OID642650960 
Productpseudouridine synthase 
Protein accessionYP_001924932 
Protein GI188581487 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.7178 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.112154 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAGGCGG TGCGCCTTGA CCGGCTGCTG GCCAATCTCG GCTACGGCTC GCGCCGGGAG 
GTCGAGGGGC TGGCCCGTGC CGGCCTCGTC CGCCGCGACG GGGAGGCGCT GAGGGATGCC
TCGCAGCGCA TTGCCCTCGA ACCCGACCTT TCCGCCCGGA TGACGGTGCA GGGTGCGCCT
CTCGATCCGC TGCCCGGCGT CTGCCTGATG CTGCACAAGC CCCTCGGCGT CACCTGCTCG
CACAAGGAGG CGGGGCCGCT GATCTACAGC CTGCTGCCGG AGCGCTGGCG GCGGCGCGAT
CCGGCGCTCT CCACGGTCGG GCGTCTCGAC AAGGAGACCT CGGGCCTGCT GCTCATGACC
GATGACGGCG CGCTGCTGCA CCGGATCATC GCGCCGAAGG CCAAGGTGGC CAAGCGCTAC
CGGGTGACGC TGGCCCGTCC GCTCCAGGGC GACGAGGCCG CGATCCTCGC CTCGGGCGAA
CTGATGCTGG AGGGCGAGGA CAAGCCGCTC CTGCCCGTCG AGATGGAGGG TGAGGACGCG
ACCCACTGCA CCGTGACCCT GCACGAGGGC CGCTACCATC AGGTCCGGCG CATGTTCGCC
GCTTTGGGCA ACCACGTCGA TGCGCTCCAC CGCGACCGCG TCGGCGGTCT GGCGCTCCCC
GCCGACCTGC CGGCGGGGGA GTTCCGGATT CTGGGGCCGG GCGAGATTGC CGCGGTGTTC
GGGGGATAG
 
Protein sequence
MKAVRLDRLL ANLGYGSRRE VEGLARAGLV RRDGEALRDA SQRIALEPDL SARMTVQGAP 
LDPLPGVCLM LHKPLGVTCS HKEAGPLIYS LLPERWRRRD PALSTVGRLD KETSGLLLMT
DDGALLHRII APKAKVAKRY RVTLARPLQG DEAAILASGE LMLEGEDKPL LPVEMEGEDA
THCTVTLHEG RYHQVRRMFA ALGNHVDALH RDRVGGLALP ADLPAGEFRI LGPGEIAAVF
GG