| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_2088 |
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| Symbol | |
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| ID | 6308923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium populi BJ001 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010725 |
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| Strand | + |
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| Start bp | 2247094 |
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| End bp | 2249196 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 642650811 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001924785 |
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| Protein GI | 188581340 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.133326 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCCGA ACCGCCCGGA CGATGCCGAC ATCATGTACC GTCTCCTGGT CCAGGGGGTG
ACGGACTACG CGATCTACAT GCTGTCCACG GACGGCCTCG TCGTGAACTG GAATGCGGGG
GCGCAGCGCG CCAACGGCTA CACGGCCGAA GAGATCATCG GGCACAGCTT CGCCGGCTTC
TACACGCGGG AGGATCGCGC CGCGGGACTG CCCGGGCGGA ACCTCGAGAC GGCGCGTCGG
GAGGGCCGGT TCGAGGCGGA GGGCTGGCGC CTGCGCAAGG ACGGCTCCCG CTTCTGGGCC
CATGTCGTGA TCGATGCGAT CCACGACGAC GAGGGCCGCT TCATCGGCTT TGCCAAGATC
ACCCGCGACA ACACCGAGAA GCGCGCCAGT GCCGTCAAGC TCGATGCCGC CCTCGACAAT
CTCGACCTTG CCATGTCCAA CATGGCCCAG GGCCTGTGCC TCATCGACGG CGAGGGGCGC
GTGGTTCTCG CCAACGAGCG GATGCACGAG ATCCTCGCGG TGCCGGGCTG CGATCCGCTC
GTGGGCGCGG CGATCCGGGC GGTGCTGTCC GAAGCGCTGA GCGAGGATGC CGCCCTTGTC
TTCGTGGCGG ACCACCTGCG CCCCGACCTC GGCCTCGACA GTTCCGCGGT CTCCGAGATC
GTTCATCGGG AGCGGATCCT CTCGGTCACG ACCCGACGCC TTGCCGCGGG GGGGTGGGTC
TCGACCTTCG TCGACGTGAC CGAGCGGCGC CAGTTCGAGC GGCAGATCCA GCATCTCGCC
CAGCACGATC TCCTGACGGA TCTGGCCAAT CGCGCGACGC TGCATCAGGC CCTGACCGAG
ACCCTGGCCT CCGAGACGTG GGAGAGCTGC GCCGTCCTCT ATATCGATCT CGACCGCTTC
AAGCCGATCA ACGACACGTT CGGCCACGCC GCTGGCGACC AACTGCTCCA GGAGGTGGCC
CGGCGCCTGC GGCGGACGGT GCGGGCGCAG GACGTGATCG CGCGCCTGGG CGGCGACGAA
TTCGCGCTGA TCCTCAGGCC CGCCGATCCG CAGCATCTGG CGGGCACGGC GCAGCAGATC
CTCGAAGCCC TCAACCAGCC CTACGCCGTC CGGAGGCTGC CGATCCGGAT CGGCGCCAGT
ATCGGCATCG CCGCCGCGCC GCTGACCGGG CGCGATCCCG ACCTGCTCCT GCGCAATGCC
GACCTCGCCC TCTACGAGGC CAAGAAGGAG GGGCGGAACC GCTACAGCTT CTACAACCCG
TCGATGGGCG ACACCGCCGC GGCCCGGGCG AGCCTGGAGG CCGACCTGAA CCGGGCGTTG
GAGCAGCGCG AATTCGTCCT CCACTACCAG CCGATCGTGC GCGCCCGCAC CGGTGCGACC
ATCGGCTTCG AGGCGCTGCT GCGCTGGCGG CGGCCGGACG GGGTGGCGAT CTCGCCCGCG
GACTTCGTGC CGGCGGCCGA GGAGGCGGGG CTGATGCCCG AGATCGGTGC CTGGATCCTG
GCCGAGGCGT GCCGCGAGGC GGCCGCTTGG CCCGCCCATC TCACCGTGGC GGTCAACGTC
TCGGCGACGC AATTGCGCAG CGCCCTGTTC ATCGACGCCG TCGAGCGGGC GCTGGCCGCG
AGCGGTCTGC CGCCGCACCG GCTGGAGGTC GAGATCACCG AGACGGCGGT GCTCCAGAAC
CGCGAACTCG CCCTCAGCCT GCTCCAGCGG CTGCGGGCCA TGGGGGTGAT GATCGCACTC
GACGATTTCG GCACCGGCTA CTCGTCGCTG AGCTTCGTCC ACACCTTCCC GCTCACACGC
CTCAAGATCG ACCGGAGCTT CGTCCAGGGG CTCGGCCGGG ATCCGCAATC GACGGCGATC
GTGCGGGCCA TCATCGGCCT GTCGCGCAGC CTCCGCCTGG CGGTGACGGC CGAGGGCGTG
GAAACGGAGG AGCAGCACCG GCTCCTGGCG CGGGAGCGCG GTCTCGACCT GCAGGGCTAC
CTGCTGGGTC GCCCGGATTT GCCGGCGTGC CTCGATACCG TCGGCGCGCC ACGCAAGTCC
CTGCGGCGCG CCGTGCCGAA GCACGATCCG TCTGAGGAAC CGCGATCCTC GCGAGCCGCC
TGA
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| Protein sequence | MMPNRPDDAD IMYRLLVQGV TDYAIYMLST DGLVVNWNAG AQRANGYTAE EIIGHSFAGF
YTREDRAAGL PGRNLETARR EGRFEAEGWR LRKDGSRFWA HVVIDAIHDD EGRFIGFAKI
TRDNTEKRAS AVKLDAALDN LDLAMSNMAQ GLCLIDGEGR VVLANERMHE ILAVPGCDPL
VGAAIRAVLS EALSEDAALV FVADHLRPDL GLDSSAVSEI VHRERILSVT TRRLAAGGWV
STFVDVTERR QFERQIQHLA QHDLLTDLAN RATLHQALTE TLASETWESC AVLYIDLDRF
KPINDTFGHA AGDQLLQEVA RRLRRTVRAQ DVIARLGGDE FALILRPADP QHLAGTAQQI
LEALNQPYAV RRLPIRIGAS IGIAAAPLTG RDPDLLLRNA DLALYEAKKE GRNRYSFYNP
SMGDTAAARA SLEADLNRAL EQREFVLHYQ PIVRARTGAT IGFEALLRWR RPDGVAISPA
DFVPAAEEAG LMPEIGAWIL AEACREAAAW PAHLTVAVNV SATQLRSALF IDAVERALAA
SGLPPHRLEV EITETAVLQN RELALSLLQR LRAMGVMIAL DDFGTGYSSL SFVHTFPLTR
LKIDRSFVQG LGRDPQSTAI VRAIIGLSRS LRLAVTAEGV ETEEQHRLLA RERGLDLQGY
LLGRPDLPAC LDTVGAPRKS LRRAVPKHDP SEEPRSSRAA
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