| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_1993 |
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| Symbol | |
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| ID | 6310093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium populi BJ001 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010725 |
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| Strand | - |
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| Start bp | 2136436 |
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| End bp | 2139348 |
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| Gene Length | 2913 bp |
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| Protein Length | 970 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 642650717 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001924691 |
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| Protein GI | 188581246 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGCACGC TTTCTCTGGT CCTTGCGATC CTGACGGCCG TGGCGGGCGC TCTCGCCGGC
CTCCTCGGGA CCACCGCCCC CGCCCACGCG GTCGAAGCCG TGCGCGTCAC CCTCGACGCG
CCAGCGATCG ACCTGACGCC GACGATCGAA CGCTACCGCT CCGACGGCGA CCTGATCCAG
ATCTCCACCG CCCCGGGCAA GGACGGCATC GTACGGCGCA TCGCGGTGAA GGCGCGCGAG
GCCGGCGCGC GGCCCGACTG GATGGTGTTC GCGCTCACCA ACGACACCGA CGAGCAGATC
GACCGCCTGC TGGTCGCCCC CCATTTCCGC CTCGTCGGTT CCGGGGTGAT CTGGCCCGAT
CTCGGCGGCT CGCGCATCGC CGCGATCACC GCGAGCGAGG GCATCCGCCC CGAGCGCGAC
GAGAGCCTCG ACGCCGACCA GTTCCTGATC ACCATCGATC CCGGCACGAC GGTCACCTAC
GTCGCCGAGC TGAAGGGGCC CAACATCCCG CAGGTCTACC TCTGGGATCA GGACGCCTAC
CGCAAGAAGA CCTCGGGGCT GACCCTCTAC AAGGGCATCA TCATCGGCAT CGCCGGGCTG
CTCGCGCTGT TCCTCACGAT CATCTTCGTG GTGAAGGGCG CGATCATCTT TCCCGCGGCA
GCCGCGCTCT CCTGGGCGGT GCTGGCCTAT GCCTGCATCG ATTTCGGCTT CCTCCAGCGG
GTCTTTCCGG TGACGGAGCT GGCGGAGCGG ATCTACCGCG CCTCGGCCGA GGCCGTGCTC
GGTGCCACCC TGCTCGTGTT CCTGTTCGCC TACCTGAACC TGTCGCGCTG GCACGTGCGC
TACAGCCACG TCGCCTTCTT CTGGCTGACC TTCCTTGCCG GCCTCGTGGC GCTCGCGGTG
TTCGATCCGC CGGTGGCGGC GGGCGTGGCG CGCATCTCCA TCGCCGCGGT GGCCGGCGTC
GGCCTCCTGC TGATCCTGTA TCTGGCCGTT CATAACGGCT ACGACCGCGC CATCCTGCTG
GTGCCGACCT GGCTGCTGCT GCTGGTCTGG GTGGTGGCGG CGGGCTTCGC CATCACCGGT
CAGATCGGCT CCGACCTCGT GCAGCCGGCG CTCATCGGCG GCCTCGTGCT CATCGTGATG
CTGATCGGCT TCACCGTGAT GCAGCACGCC TTCGCCGGAG GGGGGCTCAG CCACAGCCTC
GTCTCGGACA CCGAGCGCCG GGCGCTGGCG CTGACGGGGG CGGGCGACAT CGTGTTCGAC
TGGGACGTCC CCGGCGACCG CGTCTTCGCC GGACCCGAGA TCGAGGCGCA GCTCGGGCTC
AAGCGCGGCG CCCTCGAAGG GCCGGCGGCG AACTGGCTCG GCCTGCTCCA TCCCTTCGAC
GTGGAGCGCT ACTCGGCGGC CCTCGACACG GTGATCGAGG AACGGCGCGG GCGCATCATC
CACGATTTCC GCCTGCGCTC CGCAGACGGC CCCTACGCGT GGTACCGGCT CAAGGCCCGC
CCGGTGATCG GCACCGACGG CGAGGTGATC CGCATCGTCG GCACCATCAG CGACGTCACC
GAGGCGAAGA CCGCCGAGGA GCGGCTGCTG CACGATGCGG TGCATGACAG CCTCACCGGC
CTGCCCAACC GCGAGCTGTT CCACGACCGG CTGGAGGCCG CGCTGGCGCT GGCCAGCCAG
GATCCGCGCC TCAAGCCCGC GGTGATCGCG CTCGACATCG ACCGGTTCAA GGCAATCAAC
GACGCCATCG GCCTCTCGGC GGGCGACTCG ATCCTGCTCA CGCTCTCGCG CCGGCTCGGG
CGCCTGCTGC GGCCGCAGGA CACCCTGGCC CGGGTCGCGG GCGACGAATT CGCGGTGATC
CTGCTCTCCG AGCGCGAGCC CGACCGCATC CTGTCGTTTG CCGAGATGAT CCGGCGCGCC
ATCGCCACCC CCGTCACCTA TGCCGACCGC GAGGTGTTCC TCACCGTCTC TATCGGCATC
GCGCTGCACG AGGCCGCGCC GGGCGCGGGT CAAGGTGCCC AGCCGCGGCG GGAAGAGGTG
TTCAAGAACG CCGAGATGGC GATGATCCAG GCCAAGCGCG GCGGCGGCGA CCGCATCGAG
GTGTTTCGCG CCAACATGCG GCTGGAGCGC TCCGACCGGC TCATGCTGGA GGCGGACCTG
CGCAAGGCGC TGGAGCGCAA CGAGATCAAG GTGCTGTTCC AGCCGATCGT CCGGCTGGAG
GACCGCACGG TGGCGGGCTT CGAGACGCTC CTGCGGTGGG ACCACCCGAA GCTCGGACGC
ATCCCACCCT CGACCTTCCT GCCGGTGGCG GAGGAAACGG GCGTCATCGT CCCGCTCGGC
AACTTCGCCA TCGAACGGAC GGCGCTGGAA CTCGCCGCCT GGCAGCGCTC GCTCGACGTC
GAGCCGCCGA TCTTCGCCTC GGTCAACGTC TCCTCGCGCC AGCTCCTGCG CCACGACCTC
CTGCACGACG TGAAGACGGT GATCGCCCGC ACCGGCGTGC TGCCCGGCTC GCTCAAGCTG
GAAATGGCCG AGGGGCTGGT GATGGAGAAC CCGGAATACG CCGCGCAGAT GCTCACCCGC
ATCCACGACC TCGGCGCCGG CCTGATCCTC GACGATTTCG GCACCGGCTA CTCGGCGATC
TCCTATCTCC AGCGCTTCCC CTTCGACACG ATCAAGATCG ACCAGAGCTT CGTGCGCCAG
CTCGGCCAGG GCCGCACCGC CATGCTGCGC TCGGTGCTGC GGATGGGGCA GGAGCTCGGT
CTCGCCACCA TCGCCGAGGG CGCCGAGTCG GAGGAGGATG CGCAGGGGCT GCAGGAACTC
GGCTGCGACT ATGCGCAAGG CGCGGCCTTC GGCGAGCCGA TGACCGTGCT CCAGGCCCGC
CAGCTCGTCG GCGCCGCGCC CGAGGCGGCC TGA
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| Protein sequence | MRTLSLVLAI LTAVAGALAG LLGTTAPAHA VEAVRVTLDA PAIDLTPTIE RYRSDGDLIQ
ISTAPGKDGI VRRIAVKARE AGARPDWMVF ALTNDTDEQI DRLLVAPHFR LVGSGVIWPD
LGGSRIAAIT ASEGIRPERD ESLDADQFLI TIDPGTTVTY VAELKGPNIP QVYLWDQDAY
RKKTSGLTLY KGIIIGIAGL LALFLTIIFV VKGAIIFPAA AALSWAVLAY ACIDFGFLQR
VFPVTELAER IYRASAEAVL GATLLVFLFA YLNLSRWHVR YSHVAFFWLT FLAGLVALAV
FDPPVAAGVA RISIAAVAGV GLLLILYLAV HNGYDRAILL VPTWLLLLVW VVAAGFAITG
QIGSDLVQPA LIGGLVLIVM LIGFTVMQHA FAGGGLSHSL VSDTERRALA LTGAGDIVFD
WDVPGDRVFA GPEIEAQLGL KRGALEGPAA NWLGLLHPFD VERYSAALDT VIEERRGRII
HDFRLRSADG PYAWYRLKAR PVIGTDGEVI RIVGTISDVT EAKTAEERLL HDAVHDSLTG
LPNRELFHDR LEAALALASQ DPRLKPAVIA LDIDRFKAIN DAIGLSAGDS ILLTLSRRLG
RLLRPQDTLA RVAGDEFAVI LLSEREPDRI LSFAEMIRRA IATPVTYADR EVFLTVSIGI
ALHEAAPGAG QGAQPRREEV FKNAEMAMIQ AKRGGGDRIE VFRANMRLER SDRLMLEADL
RKALERNEIK VLFQPIVRLE DRTVAGFETL LRWDHPKLGR IPPSTFLPVA EETGVIVPLG
NFAIERTALE LAAWQRSLDV EPPIFASVNV SSRQLLRHDL LHDVKTVIAR TGVLPGSLKL
EMAEGLVMEN PEYAAQMLTR IHDLGAGLIL DDFGTGYSAI SYLQRFPFDT IKIDQSFVRQ
LGQGRTAMLR SVLRMGQELG LATIAEGAES EEDAQGLQEL GCDYAQGAAF GEPMTVLQAR
QLVGAAPEAA
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