| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_1835 |
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| Symbol | |
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| ID | 6312724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium populi BJ001 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010725 |
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| Strand | + |
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| Start bp | 1973399 |
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| End bp | 1975402 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642650558 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_001924533 |
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| Protein GI | 188581088 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.807169 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAGAGG CGGCCGTGAG CAAGGTCGAG ACGCTGCAGC GTCCCAAGAC CCGCGACGTG
TCCCTCGACG ATGTCGAGCG TGGCGTCCAG AACGCCGCCC GCGCCCTCAC CGAGATGACG
CAGACCGACG GCCACATCTG CTTCGAGCTC GAAGCGGATG CGACCATCCC CTCCGAATAC
ATCCTGTTCC ACCAGTTCCG CGGAACCGTG CCGCGCGACG GCCTGGAAGC CAAGATCGGC
AACTACCTGC GCCGCACGCA GTCGAAGGTG CATGGCGGCT GGGCGCTGGT CCATGACGGC
CCGTTCGACA TGAGCGCGAC CGTGAAGGCC TATTTCGCCC TCAAGATGAT CGGCGACGAC
ATCGAGGCGC CGCACATGCG CGCGGCCCGC AAGGCGATCC TGCAGCGCGG GGGCGCGGCC
AACGCCAACG TCTTCACTCG CATCCTGCTC GCCCTCTACG GCGAGGTGCC CTGGGCCGCG
GTGCCGGTGA TGCCGGTGGA GGTGATGCAC CTGCCGAAGT GGTTCCCGTT CCACCTCGAC
AAGGTGTCCT ACTGGGCCCG CTGCACCATG GTGCCGCTGT TCGTGATCCA GGCCAAGAAG
CCGCGGGCGA AGAACCCGCG CGGCATCGGC GTGGCCGAAC TGTTCGTGAC CCCGCCCGAT
TCGGTGCGGA CCTGGCCGGG CTCGCCCCAC GCCACTTGGC CGTGGACGCC GATCTTCGGC
GCCATCGACC GCGTGCTGCA GAAGACGCAG GACCACTTCC CGAAAGTGCC GCGCCAGCGC
GCCATCGACA AGGCGGTGGC CTGGGTGTCC GAGCGCCTGA ACGGCGAGGA CGGCCTCGGC
GCCATCTTCC CGTCGATGGT CAACTCGGTG CTGATGTACG AGGTGCTCGG CTATCCCCCC
GATCATCCGC AGGTGAAGAT CGCGCTGGAA GCCATCGAAA AGCTCGTCGC CGAGAAGGAC
GACGAGGCCT ATGTCCAGCC CTGCCTGTCG CCGGTCTGGG ACACGGCGCT GACCAGCCAC
GCCATGCTGG AGACCGGCGG CGCCGCGGCC GAGGCCAATG CCCGCGCCGG CCTCGACTGG
CTGAAGCCGC TGCAGATCCT CGACATCAAG GGCGACTGGG CCGAGACCAA GCCGAACGTG
CGCCCCGGCG GCTGGGCCTT CCAGTACGCC AACCCGCACT ATCCCGATCT CGACGACACC
GCCGTGGTGG TGATGGCGAT GGACCGCGCC CAGCGCCAGC ACGGTCTGGT GAGCGGAATG
CCGGACTACT CGGCCTCGAT CGCCCGCGCC CGCGAGTGGG TCGAGGGGCT CCAGAGCGCC
GACGGCGGCT GGGCGGCCTT CGACGCCGAC AACAACCACC ACTACCTCAA CCACATCCCG
TTCTCGGATC ACGGCGCGCT GCTCGATCCG CCGACCGCGG ACGTGACCGC CCGCGTCGTC
TCGATGCTGT CGCAGCTCGG CGAGACCCGC GAGACCAGCC GGGCGCTCGA CCGCGGTGTG
ACCTACCTGC TCAACGACCA GGAGAAGGAC GGGAGCTGGT ACGGCCGCTG GGGCATGAAC
TTCATCTACG GCACGTGGTC GGTGCTCTGC GCGCTGAACG CCGCCGGTGT CGATCCGCAA
TCGCCTGAGA TCCGCAAGGC GGTGGCGTGG CTCATCCGCA TCCAGAACCC GGATGGCGGC
TGGGGCGAGG ATGCCTCCTC CTACAAGCTC AACCCCGAAT TCGAGCCGGG CTACTCCACC
GCCTCGCAGA CGGCCTGGGC GCTGCTCGCC CTCATGGCGG TGGGCGAGGT GGACGATCCG
GCGGTCGCCC GCGGCGTCAA CTACCTGATG CGCACGCAAG GGCAGGACGG GTTGTGGAAC
GAGGAGCGCT ACACCGCGAC CGGCTTCCCG CGGGTGTTCT ACCTGCGCTA CCACGGCTAC
CCGAAATTCT TCCCGCTCTG GGCGATGGCC CGCTTCCGCA ACCTGAAGAA GGGTAACAGC
CGTCAGGTGC AGTTCGGGAT GTGA
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| Protein sequence | MREAAVSKVE TLQRPKTRDV SLDDVERGVQ NAARALTEMT QTDGHICFEL EADATIPSEY
ILFHQFRGTV PRDGLEAKIG NYLRRTQSKV HGGWALVHDG PFDMSATVKA YFALKMIGDD
IEAPHMRAAR KAILQRGGAA NANVFTRILL ALYGEVPWAA VPVMPVEVMH LPKWFPFHLD
KVSYWARCTM VPLFVIQAKK PRAKNPRGIG VAELFVTPPD SVRTWPGSPH ATWPWTPIFG
AIDRVLQKTQ DHFPKVPRQR AIDKAVAWVS ERLNGEDGLG AIFPSMVNSV LMYEVLGYPP
DHPQVKIALE AIEKLVAEKD DEAYVQPCLS PVWDTALTSH AMLETGGAAA EANARAGLDW
LKPLQILDIK GDWAETKPNV RPGGWAFQYA NPHYPDLDDT AVVVMAMDRA QRQHGLVSGM
PDYSASIARA REWVEGLQSA DGGWAAFDAD NNHHYLNHIP FSDHGALLDP PTADVTARVV
SMLSQLGETR ETSRALDRGV TYLLNDQEKD GSWYGRWGMN FIYGTWSVLC ALNAAGVDPQ
SPEIRKAVAW LIRIQNPDGG WGEDASSYKL NPEFEPGYST ASQTAWALLA LMAVGEVDDP
AVARGVNYLM RTQGQDGLWN EERYTATGFP RVFYLRYHGY PKFFPLWAMA RFRNLKKGNS
RQVQFGM
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