| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_1834 |
|---|
| Symbol | |
|---|
| ID | 6312723 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 1972053 |
|---|
| End bp | 1973354 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 642650557 |
|---|
| Product | squalene-associated FAD-dependent desaturase |
|---|
| Protein accession | YP_001924532 |
|---|
| Protein GI | 188581087 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3349] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR03467] squalene-associated FAD-dependent desaturase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGGAA CGGTTCACGT CGTCGGCGCC GGGCTCGCCG GCCTCTCGGC CGCCGCCTCG
CTGGCGGATG CGGGTCAGCA CGTCGTGCTG CATGAGGCCG CCAAGCAGGC GGGGGGGCGC
TGCCGCTCCT ATTTCGACCC CTCGCTCGGC CTGACCATCG ACAACGGCAA CCACCTGCTC
CTGTCGGGCA ACCGCTCGTC CCTCGACTTC CTGCGGCTGA TCGGGGCGCC GGACGACGCC
CTGACCGGCC CCGACGAGGC GGCCTTCCCC TTCGCCGACC TTCGCACCGG CGAGCGCTGG
ACCCTGCGCC CGAACGAGGG CCGCCTGCCG TGGTGGGTGC TGCGGGCGGG ACGCCGCGTG
CCGGGTACCC GCGCGCGGGA CTATCTCGCG CCGGTCTCCC TCATGATGGC GGCCTCGGGC
AACAAGCCGG GCCAGAGCGG CACGATCGGC GAAAAGATGT CCTGCGAGGG GCCGCTCTAC
GAGCGGCTCT GGCATCCGGT CCTGCTCGCC TCCCTCAACA CCGATCCGCG CGAGAGCGAT
GTCGGGCTCG CCGCCACCAT CCTGCGCGAG ACGCTCGGGG CGGGCGGGCG GGCCTGCCGT
CCGCTCATCG CGGTCGAGGG CCTGTCCACC GCCTTCGTCG ATCCGGCCCT GCGCTTCCTC
GCGGAGCGCG GCGCAGAGAT CCGCTACGGC CGGCGCCTGC GGGCGCTGAG CCTCTCGCAG
GGCCGGATCG AGCGCCTCGA CTTCACCGAC GAGCCGGTCG CGGTCGGCCC CGACGACGCG
GTCGTCCTGG CCCTGCCGCC GTGGGTCACC TCCGAACTCC TGCCCGGAAC CCCCGCGCCG
CAGGAATTCC GCTCGATCGT CAACGCGCAT TTCGCCGTGC GTCCGCCGGA GGGGGCGCCG
CTGATCCTCG GCGTCGTCGG CGGCCTGACC GAATGGCTGT TCGCCTATCC GGATCGCTTT
TCAGTCACCA TCAGCGGAGC CGACCGCCTG TTGGAGGACG GCCGCGAGGA TCTTGCGCGC
CGGATCTGGG TTGAGATCGC GGAACTCAAC GGACTTGCAC GTGAATTGCC TAGCTGGCAG
ATCGTCAAGG AGAAGCGGGC GACCTTCGCG GCGACGCCCG CGGAAGCCGC GCGCCGCCCC
GGCGCTGCGA CGCGCTACCG GAATCTGGTT CTGGCCGGCG ATTGGACCGA GACGGGTCTA
CCCTCGACCA TCGAGGGCGC GATCCGTTCC GGGACGAACG CCGCGCAAGC CCTGTTCCGC
ACAGGGATGT GCGGACGGGC ACAGGCACAG GGAGTCGCTT GA
|
|---|
| Protein sequence | MSGTVHVVGA GLAGLSAAAS LADAGQHVVL HEAAKQAGGR CRSYFDPSLG LTIDNGNHLL
LSGNRSSLDF LRLIGAPDDA LTGPDEAAFP FADLRTGERW TLRPNEGRLP WWVLRAGRRV
PGTRARDYLA PVSLMMAASG NKPGQSGTIG EKMSCEGPLY ERLWHPVLLA SLNTDPRESD
VGLAATILRE TLGAGGRACR PLIAVEGLST AFVDPALRFL AERGAEIRYG RRLRALSLSQ
GRIERLDFTD EPVAVGPDDA VVLALPPWVT SELLPGTPAP QEFRSIVNAH FAVRPPEGAP
LILGVVGGLT EWLFAYPDRF SVTISGADRL LEDGREDLAR RIWVEIAELN GLARELPSWQ
IVKEKRATFA ATPAEAARRP GAATRYRNLV LAGDWTETGL PSTIEGAIRS GTNAAQALFR
TGMCGRAQAQ GVA
|
|---|
| |