| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_1190 |
|---|
| Symbol | |
|---|
| ID | 6313197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 1271496 |
|---|
| End bp | 1273001 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642649908 |
|---|
| Product | Carbohydrate-selective porin OprB |
|---|
| Protein accession | YP_001923897 |
|---|
| Protein GI | 188580452 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3659] Carbohydrate-selective porin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCTG GGAAGGCAGC ATGGGCCGCG CTCGGCCTCT GCACCGCACT CGGGATCGGC
GCGACATCGG CCGAAGCGCA GGACGCGCCC GCGCCGCCGG GCCGCGCGCA GGTGGCGAAC
GGCGCCCCCG CCCTCGTCCG GCGCCCGGCC CTGCGCCGGG TCGCGCGGCG GGCGCCGCGT
CCCCGCCCAT TCGGCAATGA CGGCAGCGCC GCGGCGGCGG CCGACGTGCT CGGCCAGACC
GCGACGCCCC CCGCCCTGTC GCCGGGGACA TTCGATCTCG GCAACGGCCT CTCGCTCCTC
CTGAACTATA CGGGGCAGGC GGCAGCCAAC CCGATCGGCG GCATCCGCCA GGGCTCGGCT
TACGCCGGGC AGCTCTTCTT CGGCATCGAC GGCGACCTGC AGCGGCTCGC CGGGATCGAG
GGCGGCTCGT TCCACATCGC GGTCACGAAT CGCCACGGCC GCAACCTCGC CGACGACCGC
ATCGGCAACA ACACGAGCGT GCAGGAGATC TTCGGCGGCG GCCAGACCAC GCGGCTGACG
CTACTCTCCT ATCAGCAGAA GCTGTTCGAC AACCGCCTCG ACATCGAGGT CGGACGCTTG
GTGGCCAACA TCAACTTCCT CAACTCGCCG ATCTACTGCA ACTTCCAGAC GAACTCCGCC
TGCGGCAACC CGACCTTCGT CTTCAAGACC TCGAACTTCA CCTTCTGGCC GGTGGCGAGC
TGGGGCGGCC ACGCCAAGGC ATGGCTGACC GATCGGGTGT TCTTCCATGT CGGCGCCTAC
GAGGTGAACC CGCTGCACCA GCAGCCCGGC GACAACGGCC TCGACTTCTC GACCAAGGGT
GCGACGGGCG CGATCGTGCC GTTCGAACTC GGCTACTCGA CGACGTTTGC CAACGACGAA
CTGCCCCGCA ACTACGGCAT CGGCGGCTGG ATCGACCGCT CCGACTACAC GGACCCCGTG
CTCGATGCGG CGGGCGGGCG CCGGGTGCTC ACCGGCCTGT CGCCGGCCAC GCGGTTCGGG
CGCTCGGGCG TCTATGCCCG CTTCGACCAG ATGGTCTGGC GCCCGGACCC GAAGGGCATC
CAGGGCCTGA CCCTGTTCGG GGTCGCCATG GCCGGCACCG GGGGCCGGCT GGTCGAGGAT
TACTTCCTCG AGATCGGCGC GCTCCAGACC GGCACCTTCG CCGGCCGCCC CTACGACACG
GTGGGCTTCG TCATCAACAC GCAGGCCTTC AGCCCGCTGG CGCTCGGCAA CATCGAGGCG
GCGCAGGCCT CGCTCGGCCT GTTCCGCGCC ATCCCGAGGC AGCAGATCAT GATGGAGCTG
AATTACGGCA TCCAGGTCTC GCCCGCGATC CGGCTGACGC CGAACCTGCA ATACATCGTC
AACCCCGACC AGACCCGATT TCCGTTCTAC CCGAAGAACA TCCCCGACGC CTTCGTCGTC
GGCGCCAAGC TCTCGGTGGA CCTGTTCACG CTGGCCGGCC TCGCCAAGGG GCCGGGGAGC
CCGTGA
|
|---|
| Protein sequence | MNAGKAAWAA LGLCTALGIG ATSAEAQDAP APPGRAQVAN GAPALVRRPA LRRVARRAPR
PRPFGNDGSA AAAADVLGQT ATPPALSPGT FDLGNGLSLL LNYTGQAAAN PIGGIRQGSA
YAGQLFFGID GDLQRLAGIE GGSFHIAVTN RHGRNLADDR IGNNTSVQEI FGGGQTTRLT
LLSYQQKLFD NRLDIEVGRL VANINFLNSP IYCNFQTNSA CGNPTFVFKT SNFTFWPVAS
WGGHAKAWLT DRVFFHVGAY EVNPLHQQPG DNGLDFSTKG ATGAIVPFEL GYSTTFANDE
LPRNYGIGGW IDRSDYTDPV LDAAGGRRVL TGLSPATRFG RSGVYARFDQ MVWRPDPKGI
QGLTLFGVAM AGTGGRLVED YFLEIGALQT GTFAGRPYDT VGFVINTQAF SPLALGNIEA
AQASLGLFRA IPRQQIMMEL NYGIQVSPAI RLTPNLQYIV NPDQTRFPFY PKNIPDAFVV
GAKLSVDLFT LAGLAKGPGS P
|
|---|
| |