| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_1110 |
|---|
| Symbol | |
|---|
| ID | 6312970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 1182843 |
|---|
| End bp | 1184405 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 642649830 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001923819 |
|---|
| Protein GI | 188580374 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3845] ABC-type uncharacterized transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.434413 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.608996 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCTT CCGCAAACCC CGTCCCGGCC GGCGCTCACT CCGGGGCCCT TGCCGTCGAG
ACCGTCGGCA TGACGAAGCG CTTCGGCGGC TTCACTGCCC TCGACGATGT CTCGATGAAG
ATCGAGGCCG GCGGCTTCCA CGCCCTGCTC GGCGAGAACG GGGCGGGCAA GTCGACCTTC
GTGAAATGCG TGATGGGCTT CTACGCGCCC ACCGCTGGCT CCGTCCTCAT CGACGGCCGC
GAGGCCGAGA TCACCGGGCC GAAGGGCGCG CAGGCGCGCG GCCTCGGCAT GGTCTACCAG
CACTTCACCC TGGTGCCCTC TCTGACCGGC GCCGAGAACC TCGTCATCGG CCGGGCCGAC
GCACCCGCGA TCCTCGACTG GACGGCCGAG CGCGCGGCGC TCGCCGACTT CATGGCGCGG
ATGCCGTTCC GGCTGAACCT CGACCGGCCG GTGGCGGAAC TCGCGGCGGG CGAGAAGCAG
AAGCTCGAAA TCGTCAAGCA GCTCTACCTC AAGGCCCGCT TCCTGATCCT CGACGAGCCC
ACCTCGGTGC TGACGCCGGC CGAGGCCGAG GAGGTGCTGG GCCTGCTGCG CGGCATGGCG
GATGCGGGCA CGCTCACGGT GCTGATGATC AGCCACAAGT TCCGCGAGGT CGAAGCCTTC
GCCCGCAGCC TCAGCGTCCT GCGCCGCGGC CGGCTCGTCG GCGGCGGCGC GGTCGGCGCT
CTGTCGCGGG ACGACATGGC GGCGATGATG GTGGGCGAGC GCACCGTCCG CACGATCGCC
GCGCGGATCG GCGAGCCCGA CCCCGCGCGC GAGATCCTGC GGGTGGACGG CCTGACCGCC
ACCGACGTCT CCGGCCTGCG ACGGATCGAT GTCGCGGATC TGCGCGTGCG CGCCCACGAG
ATCGTCGGCA TCGCCGGGGT CTCCGGCAAC GGGCAGAAGG AACTCGCCGA CGTGCTCGGC
GGCCAGATCC GCGCGACGGG CGGGCGCGTC GCGGTGCAGG GCGAGCCCTA TCGCGGCACG
AGGGCCGAGA GCCGCCGCCA CCGGGTGCGC TTCATCCCGG AAGAACCCCT GCGCAACGCC
TGCGCACCGC GGATGTCGGT GGCCGAGAAC CTCGCCTTCC GCGCCTTCGA CCGGCGCGGC
GACGATCCCG CCGGCCCGCC GACCCTCTGG CTCGATCGGC GCGCCATGAG CCGGCGGGCG
AAGGACCTGA TCGCCCGCTT CAAGGTGAAG ACCGCCTCCT CGGAGGCGCC GATCGCCACG
CTTTCGGGCG GCAACGTCCA GCGCGCCGTG CTGGCGCGCG AACTCACCGA TCCGGTCGAT
CTCCTGATCG TCGTCAATCC CTGCTTCGGC CTCGATTTCG CGGCGGTCGC CGAGATCCGC
TCGCGCATCG TCGCCGCGCG GAATGCCGGC GCGGCCGTGC TGCTGATCAG CGAGGATCTG
GACGAGATCC TGGAACTGTC GGACCGCATC GTCGTGATGT CGGACGGGCG CCTCGTCTAC
GAGACCCCGG CCGCCGCGGC GGAGGCCGGC GTGATCGGCC GCCACATGGC CGGGCACCAC
TAG
|
|---|
| Protein sequence | MAASANPVPA GAHSGALAVE TVGMTKRFGG FTALDDVSMK IEAGGFHALL GENGAGKSTF
VKCVMGFYAP TAGSVLIDGR EAEITGPKGA QARGLGMVYQ HFTLVPSLTG AENLVIGRAD
APAILDWTAE RAALADFMAR MPFRLNLDRP VAELAAGEKQ KLEIVKQLYL KARFLILDEP
TSVLTPAEAE EVLGLLRGMA DAGTLTVLMI SHKFREVEAF ARSLSVLRRG RLVGGGAVGA
LSRDDMAAMM VGERTVRTIA ARIGEPDPAR EILRVDGLTA TDVSGLRRID VADLRVRAHE
IVGIAGVSGN GQKELADVLG GQIRATGGRV AVQGEPYRGT RAESRRHRVR FIPEEPLRNA
CAPRMSVAEN LAFRAFDRRG DDPAGPPTLW LDRRAMSRRA KDLIARFKVK TASSEAPIAT
LSGGNVQRAV LARELTDPVD LLIVVNPCFG LDFAAVAEIR SRIVAARNAG AAVLLISEDL
DEILELSDRI VVMSDGRLVY ETPAAAAEAG VIGRHMAGHH
|
|---|
| |