Gene Mpop_0886 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpop_0886 
Symbol 
ID6309920 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium populi BJ001 
KingdomBacteria 
Replicon accessionNC_010725 
Strand
Start bp936234 
End bp938291 
Gene Length2058 bp 
Protein Length685 aa 
Translation table11 
GC content72% 
IMG OID642649602 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_001923599 
Protein GI188580154 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGGGA AGGCCGAACG TCAGGGAACC GCGGACCGCC GGCCGGCTTC GCGGGGCGGG 
GAGGGTGGTC GGGAGACGCT GCGGGGATCG GTGGGTCGCG ACGTGCGGCG TGCGGGGCTG
GCGGTGTGCC TGATCATCGC CGGAGCCGCC GCCGTCACGC TGGCGGCCGT CTCCCTGTCC
ATGCCGGGCC TGTGGGCCGC GACCGTCCTC GCCGCCGCCG CGGCCCTTGT CCTCGTCGCC
CTCGCGCTGC TCCGGCTCGC CCGCCGCCTC GACGGAGCGA TGCGGGCCGC CGAAGACTCC
GCCGCGATGT GCGCCGAAAC GACGGCCCTG ACGGTCGCGG CCGACATCGC GGCCCTGAAG
CGCAGCGAGG CGGTGCTGAG CGAGCGCATC GCCCGGCTGA ACGCGGCGCT CGATACCCTG
TCCCTGGGCT TTCTGCTCTA CGACCGCGAT CACCGGCTGC TGGTAGTCAA CCGCCGCTAT
CACGAGATCT ACCGCCTGCC TTCGGGCGCC GTGACGCCCG GCATGTCGGC GCGGGAGGTG
CTGCGCCGGA ACGTCCAGGC CGGAAGCGAG GCGGAGCGGA GCGAGGCCGA GCAGCTCGCC
GAGATCGGCG CGCTGATGGG ATCCGGCGCC GCGCCGGCCC AGATCCAGCA TCTCCCCGAC
GGCCGCGTCG TCGCCGTCGA GATCCAGCCG ATCGACGGCG GCGGCTTCGT GGCGGTCTAC
GAGGAGGCGA CCGAACGCTG GAATGCCGAG GCCCGCATCG CCCACATGGC CCGGCACGAC
GCCGTGACCG ACCTGCCCAA TCGCGTGCTG CTGCGCGAGC GGATCGAGGG GGCGATCACC
CAGGCCCGGC GCGAGACCGG CTTCGCCATG CTCTGCCTCG ACCTCGACAA CTTCAAGCAG
GTGAACGACA CCCTTGGCCA CGCCGTCGGC GACGAGTTGC TCAGGGCGGT GGCCCACCGG
CTCAGGGCCT GTGTGCGCGA GGTCGACACC GTCGCCCGGC TCGGCGGCGA CGAGTTCGCG
ATCATCCAGG CCGCGGTCAC GACGCCGGCC GATGCCGCGA CCCTGGCCCA GCGCATCCTC
GACGTGGTGA GCGCCCCCTA CGCGCTCACC CACCATTCCG TCATCGTCGG CGTCAGCATC
GGCATCGCGC TCGCGCCCGG CGACGGGCTG GAGGCCGAGC GCCTGATGCA ATGTGCCGAC
GTCGCCCTGT ACCGCGCCAA GGGCGACGGG CGCGGCGTGT TCCGGTTCTT CGAGGCGGAG
ATGGATGCCC GGCTCCAGGC CCGGCGCTCC CTCGAACTCG ATCTGCGCGC CGCCTTCGAG
GCGGAGGCGT TCGACCTGCA CTACCAGCCG ATCTACGACC TCTCGGCGGA GCGCATCTGC
GGCTTCGAGG CGTTGCTGCG CTGGACCCAT CCGACCCGCG GCCGGGTCTC GCCCGCCGAG
TTCGTGCCGC TCGCCGAGGA AATCGGCCTC ATCGTGCCGC TGGGCGAGTG GGTGCTGCGC
CGCGCCTGCC GCGAGGCCGC CGGCTGGCCC GAGGGCCTCA AGGTCGCGGT CAACGTCTCG
GCGGCGCAGT TCACCTCGAG CGCGCTGATC GGGACGGTGA AGGCGGCGCT GGCCGAGAGC
GGCCTGCCCG CCCGCCGCCT CGAACTGGAG ATCACCGAGA GCGTGCTGCT CGTCAACGGC
AGCGCCACGG TGGCGATCCT GCACGGGCTG CGCAACCTGG GCACGCGCAT CGCCATGGAC
GATTTCGGCA CGGGCTATTC CAGCCTGAGC TACCTGCGCA GCTTCCCCTT CGACAAGATG
AAGGTCGATC AGTCCTTCAC CCGCGACCTG ACGGTGGAGC AGGGCTCCGG CTTCATCGTG
CGGGCGGTGG TCAGCCTCGC CTCCAGCCTC GGCATGACAA CCACGGCGGA AGGCGTCGAG
ACGCCGGAAC AGCTCGCCTG GCTGCGCGAG GAGGGCTGCG ACGAGGTGCA GGGCTACCTG
TTCAGCCCGC CCGTGCCGGC CTGTGCGCTG CCGGCCCTGC TCGAAACCTG GAACGGGCGG
ACGCGCCGCG CCGCGTGA
 
Protein sequence
MQGKAERQGT ADRRPASRGG EGGRETLRGS VGRDVRRAGL AVCLIIAGAA AVTLAAVSLS 
MPGLWAATVL AAAAALVLVA LALLRLARRL DGAMRAAEDS AAMCAETTAL TVAADIAALK
RSEAVLSERI ARLNAALDTL SLGFLLYDRD HRLLVVNRRY HEIYRLPSGA VTPGMSAREV
LRRNVQAGSE AERSEAEQLA EIGALMGSGA APAQIQHLPD GRVVAVEIQP IDGGGFVAVY
EEATERWNAE ARIAHMARHD AVTDLPNRVL LRERIEGAIT QARRETGFAM LCLDLDNFKQ
VNDTLGHAVG DELLRAVAHR LRACVREVDT VARLGGDEFA IIQAAVTTPA DAATLAQRIL
DVVSAPYALT HHSVIVGVSI GIALAPGDGL EAERLMQCAD VALYRAKGDG RGVFRFFEAE
MDARLQARRS LELDLRAAFE AEAFDLHYQP IYDLSAERIC GFEALLRWTH PTRGRVSPAE
FVPLAEEIGL IVPLGEWVLR RACREAAGWP EGLKVAVNVS AAQFTSSALI GTVKAALAES
GLPARRLELE ITESVLLVNG SATVAILHGL RNLGTRIAMD DFGTGYSSLS YLRSFPFDKM
KVDQSFTRDL TVEQGSGFIV RAVVSLASSL GMTTTAEGVE TPEQLAWLRE EGCDEVQGYL
FSPPVPACAL PALLETWNGR TRRAA