| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_0784 |
|---|
| Symbol | |
|---|
| ID | 6309889 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 843854 |
|---|
| End bp | 844540 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 642649500 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001923497 |
|---|
| Protein GI | 188580052 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0722078 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCACC CGCAAAGACA CGCTCTGATC GTCGGCGCCT CCCGCGGCAT CGGTCTGGGC
CTCGTCGAAA CCTTCCTGGA GCGCGGCTGG AAGGTCACGG CGACGCGGCG GGGGGCCGCC
CCCGGGCTCG AACGGTTGGA CGTCCAGGGC CTGCGGGTCG AGACGGTGGA CATCGACGAC
GACGCATCCG TTGCCGCCCT GCGGGAACGG TTGGCGCGCG AACGATTCGA TCTCGTCTTC
GTCGTGGCCG GGGTGCTCAT CGAATCGGAC AAGCCGCTCC CCGCCGTGCC GCGAGCGGTC
CATGCGCAGG TCTATCTCAC CAATGCGGTG AGCCCGATCC TGTTCGCCGA CGCCTTCGCC
GACCGGCTGG CGCCCGGCGG CACGCTCGCC TTCATGTCCT CGGGGCTCGG CAGCGTCGGC
CTCAACACCG AGGGCGGCTG GGAGAACTAC CGGGCGAGCA AGGCGGCGCT CAACACCAAT
GCCCGGAGCT TCGCCGCCCG CCATGCGGCC CGCGACTTCG GCATTCTGCT GCTGCATCCG
GGCTGGGTCG CCACCGACAT GGGCGGCGCG GGGGCCGACC TCGACGTGGC GACGAGCGCG
GCCGGGCTGG CGGACGTGAT CGAGGCCAGT GCCGGGCGGA CGGATCTCGC CTTCCGCGAT
CACCGGGGCG AGACGCTGCC CTGGTGA
|
|---|
| Protein sequence | MTHPQRHALI VGASRGIGLG LVETFLERGW KVTATRRGAA PGLERLDVQG LRVETVDIDD
DASVAALRER LARERFDLVF VVAGVLIESD KPLPAVPRAV HAQVYLTNAV SPILFADAFA
DRLAPGGTLA FMSSGLGSVG LNTEGGWENY RASKAALNTN ARSFAARHAA RDFGILLLHP
GWVATDMGGA GADLDVATSA AGLADVIEAS AGRTDLAFRD HRGETLPW
|
|---|
| |