| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_0586 |
|---|
| Symbol | |
|---|
| ID | 6310971 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 633707 |
|---|
| End bp | 635710 |
|---|
| Gene Length | 2004 bp |
|---|
| Protein Length | 667 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642649294 |
|---|
| Product | RNA polymerase sigma factor RpoD |
|---|
| Protein accession | YP_001923299 |
|---|
| Protein GI | 188579854 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.418628 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0214442 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACGA AGGCAACCGA GCGGGACGAT GCGGACGCCG CCCAGGATCA ACCGACGGAC
GGCCCCCTCC TTGACCTGAC GGATGCTGCC GTCAAGCGGA TGGTCAAGCT CGCCAAGAAG
CGCGGCTACG TCACCTACGA AGAGATCAAC GAGGTCCTGC CCGACGGTCA GGTCGACGGC
GACCAGATCG AGGACGTCCT CGCCCAGCTC GACGACATGG GCATCCGTGT CGTCGAGGCC
GAGGAATCCG AGGAGACCGC GACCGAGGCC AAGGCCAACG GTGAGGCGGC CGAGGAGGAG
GAGAGTGCGG AGGGCGGCGA GGTCGCCGAG ACCGCCGGCT CCCGCGCCGT CGCGGTGGCG
ACGCCCACCA CCCGCGAGCC CACCGACCGC ACGGACGATC CCGTGCGCAT GTACCTGCGC
GAGATGGGCT CGGTGGAGCT GCTCTCGCGC GAGGGCGAGA TCGCGATCGC CAAGCGCATC
GAGGCCGGCC GCGAGGCGAT GATCGCGGGT CTGTGCGAGA GCCCGCTGAC CTTCCAGGCG
ATCATCATCT GGCGCGACGA ACTCGTCGAC GGCAAGGTTC TCCTGCGCGA CATCATCGAT
CTCGAGGCCA CCTATGCCGG CCCCGACGCC CGCGGCGCGC CGCAGGGCGG CGAGGCCGAG
GAGGGTGAGG AGTCCGAGGA TGGCGACGGC GCCGTCCCGC CGGAAGGCGG CGACGACGAG
GACGACATGG AGAACAACGT GTCGCTCGCG GCCATGGAGG CCGAGATCAA GCCGCGCGTT
CTCGAGACCT TCGACAATAT CGCCTCGAAC TACCGCAAGC TGCGCAAGCT CCAGAACGAG
GAGACGGATC TCAAGGCCGG CGGCGGCACG GTCACGTCCG CCCAGACCAA GAAGCAGGCC
GAGCTGAAGG ACATCGTCGT CACCGACGTG AAGTCGCTCT CGCTCAACGC CAACCGCATC
GAGGCGCTGG TCGAGCAGCT CTACGACATC AACAAGCGCC TCATCTCGCA TGAGGGCCGC
CTGATGCGCG CCGCCGAGCA CCACGGCGTG GCCCGCGACG AGTTCCTGCG CCACTACCAG
GGCTACGAGC TCGACCCGAA CTGGATGGAC CGCGTCGCCA CGCTCGGCGG CAAGGGCTGG
AAGAACTTCG TCGAGCGCGG CGGCCGGCAG GTCGCGGACC TGCGCGAGCA GATCCTGACG
CTCGCCTCCG AGACCGGCCT GCAGATCGGC GAGTACCGCA AGATCGTCGC CATGGTGCAG
AAGGGCGAGC GCGAGGCCCG CCAGGCGAAG AAGGAGATGA TCGAGGCCAA CCTCCGCCTC
GTGATCTCGA TCGCCAAGAA GTACACCAAC CGCGGCCTGC AGTTCCTGGA CCTGATCCAG
GAGGGCAATA TCGGCCTGAT GAAGGCGGTC GATAAGTTCG AGTACCGCCG CGGCTACAAG
TTCTCGACCT ACGCCACGTG GTGGATCCGG CAGGCGATCA CCCGCTCGAT CGCCGACCAG
GCCCGCACGA TCCGCATCCC GGTGCACATG ATCGAGACGA TCAACAAGAT CGTCCGGACC
TCGCGCCAGA TGCTGCACGA GATCGGCCGC GAGCCGACGC CCGAGGAACT GGCTGAGAAG
TTGGCCATGC CCTTGGAGAA AGTGCGAAAA GTTCTGAAGA TCGCCAAGGA GCCGATCTCC
CTCGAAACGC CGATCGGCGA CGAGGAGGAC AGCCATCTCG GCGACTTCAT CGAGGACAAG
AACGTCGTCC TGCCGATCGA TGCGGCGATC CAGTCGAACC TGCGCGAGAC CACGACCCGG
GTGCTCGCCT CGCTGACGCC GCGCGAGGAG CGCGTGCTGC GCATGCGCTT CGGCATCGGC
ATGAACACCG ACCACACCCT CGAAGAGGTC GGCCAGCAAT TCTCGGTGAC CCGCGAGCGC
ATCCGCCAGA TCGAGGCGAA GGCGCTGCGC AAGCTGAAGC ACCCGAGCCG GTCGCGGAAG
CTCAGGAGCT TCCTCGACAA CTGA
|
|---|
| Protein sequence | MATKATERDD ADAAQDQPTD GPLLDLTDAA VKRMVKLAKK RGYVTYEEIN EVLPDGQVDG
DQIEDVLAQL DDMGIRVVEA EESEETATEA KANGEAAEEE ESAEGGEVAE TAGSRAVAVA
TPTTREPTDR TDDPVRMYLR EMGSVELLSR EGEIAIAKRI EAGREAMIAG LCESPLTFQA
IIIWRDELVD GKVLLRDIID LEATYAGPDA RGAPQGGEAE EGEESEDGDG AVPPEGGDDE
DDMENNVSLA AMEAEIKPRV LETFDNIASN YRKLRKLQNE ETDLKAGGGT VTSAQTKKQA
ELKDIVVTDV KSLSLNANRI EALVEQLYDI NKRLISHEGR LMRAAEHHGV ARDEFLRHYQ
GYELDPNWMD RVATLGGKGW KNFVERGGRQ VADLREQILT LASETGLQIG EYRKIVAMVQ
KGEREARQAK KEMIEANLRL VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV DKFEYRRGYK
FSTYATWWIR QAITRSIADQ ARTIRIPVHM IETINKIVRT SRQMLHEIGR EPTPEELAEK
LAMPLEKVRK VLKIAKEPIS LETPIGDEED SHLGDFIEDK NVVLPIDAAI QSNLRETTTR
VLASLTPREE RVLRMRFGIG MNTDHTLEEV GQQFSVTRER IRQIEAKALR KLKHPSRSRK
LRSFLDN
|
|---|
| |