| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_0006 |
|---|
| Symbol | |
|---|
| ID | 6309001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 5928 |
|---|
| End bp | 7775 |
|---|
| Gene Length | 1848 bp |
|---|
| Protein Length | 615 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642648719 |
|---|
| Product | ATP-dependent DNA helicase RecQ |
|---|
| Protein accession | YP_001922737 |
|---|
| Protein GI | 188579292 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0514] Superfamily II DNA helicase |
|---|
| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAAC GCCTCGACGA GGCCCGTGCC GCGCTGAAGA AGACCTTCGG CTACGACGAT
TTCCGCCCCG GTCAGGACGA GGTGATCGGT GCCGTGCTCG ACGGCGCGGA CGTGTTCGCG
GTGATGCCGA CGGGCTCGGG CAAGTCGATG ACCTACCAGC TGCCCGCCCT GGTCGATGCC
GGGCTGACCG TGGTGGTCTC GCCCCTGATC GCGCTGATGC ACGATCAGGT GCAGCAGATG
CACGCCTTCG GCATCGAGGC CGCGACCCTC AATTCGACCG TGGCCGAAGC CACCTCCCGC
GAGACGTGGC GAAAGATCCG CTCGGGCGAC CTGCGCCTCC TGTTCGTCTC GCCCGAACGT
CTCCTGATGG ACGGCTGCAT GGACGCGCTG CGCGGCGCCG GGGTACGGCG GCTGGCCGTG
GACGAGGCGC ATTGCGTGTC GCAATGGGGC CACGACTTCC GCCCCGAATA CCGCGAGATC
GCCCGCGCCC GCGAGGCGCT CGGCAATGTG CAGACGCTCG CGCTCACCGC CACCGCCGAC
GCGGCGACCC GGGCCGAGAT CGCCGAGCGG CTGTTCCCGG CCGGGCGGCC CCCGAGAACC
TTCGTCCATT CCTTCGACCG GCCGAACATC CGGCTGACCT TCCAGCCCAA GGACAACCCG
ACCCGCCAGC TGGAGCGCTT CCTACGCGAC CGGCGGGCCG AGAGCGGCAT CATCTACTGC
TCGTCGCGCA AGCGCGTGGA GCAACTGGCC GACACCCTGA AGGGCGACGG CTTCAACGCC
CTGCCCTACC ATGCCGGGCT CGACCAGAGC ACGCGGGCGA GGAACCAGGA CACCTTCCTG
CAGGAGGACG GCGTGGTGAT GACCGCCACG ATCGCCTTCG GCATGGGCAT CAACAAGCCC
GACGTGCGCT ACGTCTGCCA CGCCGACATG CCGACCAACA TCGAGGGCTA CTATCAGGAG
ATCGGCCGCG CCGGCCGCGA CGGGCTGCCC TCCGACACGC TGACCCTCTA CGGCCTCGAC
GACATGGCGC TGCGCCGCCG CCAGATCGAC GAAAAGGAGA TTTCGGAGGA GCGCCGCCGT
GTGGAGCGGC GCAAGCTCGA GGTGATTATC GCGCTCTGCG AGGGCGCCGC CTGTCGGCGC
CAGTCGCTGC TCGGCTATTT CGGCGAGGCG AGCGAGCGGT GTGGCCGCTG CGATCTCTGC
CGCAGCGGCG TCTCCCTCAT CGATGGCACG GTGGCGGCGC AGAAGCTGCT CTCGGCCATC
GTGCGCACCG GCCAGCGCTT CGGCGCGGCC TATGTCTGCG ACGTCGTGCA CGGCAAGGAG
AGCGAACCGA TCCGCCGCAA CGGGCACGCC GCGCTGAAGA CCTTCGGCGT CGGCGCCGAC
AAGCCCGTCG CGGCGTGGCG CGCCCTCCTG CGCCAGCTCT TCGCTGCGGG GGCCGTGGCC
GAGAACACCG ACGGCTATGG CGGCCTCGTC ATGACCGAGA AGGGCGAGGC GATCCTGTTC
GGCCGCGAGA CCATCGAGGT CCGCCCCGAT CCCGAGCCGA AGAAGGCCGA ACCCAGGAGC
CGCCGTCCCG TGGCCCGCGA CGACGAGGCG AACGCGCTGA ACGAGGCGGA CGAGGCCCTG
TTCCAGCACC TGCGCGGCCT GCGGGCGACC ATCGCCCGGG CCGAGGGCAT CGCCGCCTTC
ATGGTGTTTC CGGATCGGAC GCTGATCGAG ATGGCGCGCG CGAAGCCGGT CGATCTCTGG
GCGCTCCGCA CGGTTCACGG GGTCGGCGAG CGCAAGCGCG AGGCCTATGG CCAGCGTTTC
ACCGATGCGA TCAGCGAATT TCTGGCCGAC GCCAAGAAGA CCGGTTGA
|
|---|
| Protein sequence | MSKRLDEARA ALKKTFGYDD FRPGQDEVIG AVLDGADVFA VMPTGSGKSM TYQLPALVDA
GLTVVVSPLI ALMHDQVQQM HAFGIEAATL NSTVAEATSR ETWRKIRSGD LRLLFVSPER
LLMDGCMDAL RGAGVRRLAV DEAHCVSQWG HDFRPEYREI ARAREALGNV QTLALTATAD
AATRAEIAER LFPAGRPPRT FVHSFDRPNI RLTFQPKDNP TRQLERFLRD RRAESGIIYC
SSRKRVEQLA DTLKGDGFNA LPYHAGLDQS TRARNQDTFL QEDGVVMTAT IAFGMGINKP
DVRYVCHADM PTNIEGYYQE IGRAGRDGLP SDTLTLYGLD DMALRRRQID EKEISEERRR
VERRKLEVII ALCEGAACRR QSLLGYFGEA SERCGRCDLC RSGVSLIDGT VAAQKLLSAI
VRTGQRFGAA YVCDVVHGKE SEPIRRNGHA ALKTFGVGAD KPVAAWRALL RQLFAAGAVA
ENTDGYGGLV MTEKGEAILF GRETIEVRPD PEPKKAEPRS RRPVARDDEA NALNEADEAL
FQHLRGLRAT IARAEGIAAF MVFPDRTLIE MARAKPVDLW ALRTVHGVGE RKREAYGQRF
TDAISEFLAD AKKTG
|
|---|
| |