| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nther_2921 |
|---|
| Symbol | |
|---|
| ID | 6316067 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010718 |
|---|
| Strand | - |
|---|
| Start bp | 3153168 |
|---|
| End bp | 3153740 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 642645294 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001919055 |
|---|
| Protein GI | 188587510 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 70 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATAG AGGAGATTAA AAAGAAATAT CAGGAGACAA TGCAGTATAT TGAAGATAAA
GAGTTTTCCA ATGCAGAGAA AGAACTGGAA AACATAATAG AAACTAAACC AGATTTTGCT
CCAGCGTATA ATAAGTTGGG TGTAGTGAAA GCTCGACAGG GTGAATTGGA TTCTGCATTA
GAATGTTTTA ATAAAGCAGC AGAATTGTGG CCAGAATTTT CTGCTCCCTA TAGTAATGTT
GGGAATGTTT ACATGGAAAA AGGCGATGAT ATAACTGCTG AAAAATACTA TAAACATGCA
TTATCTATAA ACGAACAAAA TCGAATCCCT TATAATAACT TAGCTAGAAT TTATAAAAAA
AGGCGACAGA TTGGGAAATT TATTAAGTAT CAAAAACTTT CCCATAAACA TAGTGGACTT
GATGGTGATC ACGAGGTGTT TAAGCACTAC TTTAATGAAG ATGTACCAGA GTCATTAAAA
AAAGGGGGAG TCACAGGTTG CTTCACAATG GGCGGAATAC TTGGAATAAT TATGGTTACA
GCTCTGATAC TAATAGGAGT TCTAACAAGC TAG
|
|---|
| Protein sequence | MDIEEIKKKY QETMQYIEDK EFSNAEKELE NIIETKPDFA PAYNKLGVVK ARQGELDSAL
ECFNKAAELW PEFSAPYSNV GNVYMEKGDD ITAEKYYKHA LSINEQNRIP YNNLARIYKK
RRQIGKFIKY QKLSHKHSGL DGDHEVFKHY FNEDVPESLK KGGVTGCFTM GGILGIIMVT
ALILIGVLTS
|
|---|
| |