| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nther_2162 |
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| Symbol | |
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| ID | 6316026 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010718 |
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| Strand | - |
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| Start bp | 2288892 |
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| End bp | 2290568 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 642644549 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_001918316 |
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| Protein GI | 188586771 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.000345974 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGGGAAGTT ATCAAAAGAA TTTAAATGAC AACCTAAATG ATAGGGATAG CAACACTTTT
GAAAGTTTAG CCAAGAGCTT ACCCCTTTTG GCTAAAGTGA TTGGTGGTTA TGCCACTATT
ACTGACAAAA AAGGGGTCAG GCTGAAGGTT ATTGATTCCA ATGGGAAGCA GCTAGAGCAC
CTGGAAGACC TACAGTATGA GTTAGCCAGG GAAGCTGCTA AAAAAGGGGA AGCAGTCTAC
GGTAATAGCC AGCTAAAACA TAATGCTGAA GCTTGGTGTC TACCAGTTGG CGATTATGTG
CTCTGCTGCA GTAAGGCGGA AGTGGCAGAA CGAAACAGGA ATCTTGAAGA AGCTTTATTG
GCATCTTTAC CTTATATTGC AAAAGTAGCA GGGGGACAAG CCGTCCTCTT TGATGATGAA
GGAAAAAGAC TTAATGCAGT TAATTCCAAG GGAGATGTCA ACAATCAATT ACTTGGCAAA
GTTAGTGAAG CCGCCAAGGA ATGTATGAAA GCTCAAAAGC CTGTACTGGG GAAATCTACT
TTTATCAGTG GTGCCAGTGC TGTTAGGATT CCCATTACTA AGGAAATTGG ATTTGGATTT
AATAATGAAG ATACAGCTCT TAAAAATCAA AAGCTTTTAG AAGAAGTTAA AAAATATCAG
ACTGCTAAAT ACAATTTTAC TGACATAATT GGTGAAAGTC AGCAGATGAG AAAAGCTAAA
GAATTGGGAG AAGCTGCTGC CAGTTCCGAT TCAAGTGTAC TAATTTGCGG TGAGACAGGT
ACTGGTAAAG AATTATTTGC CCAATCAATT CACAATGCAA GCTATAGATG CAGTAAACCT
TTTATAGCTA TTAATTGTGC TGCACTTCCG CCATCATTGA TCGAGAGTAA TTTATTCGGT
TATGTGGAAG GAGCTTTTAC TGGCGCTAAA AAAGGTGGAG CTACTGGAGT TTTTGAAAAA
GCTAATAATG GAACTTTATT TTTGGACGAA ATTAGCGAAA TGGACTTGGA TCTACAGTCA
AAATTATTGC GGGTATTACA AGAAAAAGAA GTCACTAGAA TTGGTGGTCG CAAGGTAATT
CCCTTAAACC TACGAATAAT TGCAGCTACT AACAGGAACT TGGAAGACAT GATTCAAAAG
GGACAGTTTA GACGAGATTT ATTTTTTAGA TTAAATGTAA TAGAAGTTAA ATTACCACCA
TTAAGAGATA TGAAAGAAGA TATCCCCTTG CTTGTTAATG AAACAATTAT TAAAATGAAT
TCGATTTTCG GTAAGGCCAT TAAGGGTGTC GACAAAGAAG CGCTGGAAAT GCTGATAAAT
TATGATTGGC CTGGAAATGT ACGAGAATTA TATAACTGTA TAGAAAGAGC TTTTAATCTG
ATTGGTGATG ATAATTACAT TAGAAAAAAG CATTTAAACT TTAAATTTAA TAATGGCAAT
GGTATTACAG CCCAGAATTA CATGGAGGAA ATAGAAGATA CCGAAGGTAA TCCAATTAAT
CTAGATAATG ATACAGGACA AAGAAGTCTC GATGATATAG TTGCTAATTA CGAAAAACAA
GTAATTGAGG CAGTGTTGAA AGAAGTTAAA GGAATTAGGG CCAAAGCTGC CAAAAGATTA
AATATAAGTC CGGCTACATT GTGGAGAAAA ATGAAAAAGT TAAATATTGA GGGTTAA
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| Protein sequence | MGSYQKNLND NLNDRDSNTF ESLAKSLPLL AKVIGGYATI TDKKGVRLKV IDSNGKQLEH
LEDLQYELAR EAAKKGEAVY GNSQLKHNAE AWCLPVGDYV LCCSKAEVAE RNRNLEEALL
ASLPYIAKVA GGQAVLFDDE GKRLNAVNSK GDVNNQLLGK VSEAAKECMK AQKPVLGKST
FISGASAVRI PITKEIGFGF NNEDTALKNQ KLLEEVKKYQ TAKYNFTDII GESQQMRKAK
ELGEAAASSD SSVLICGETG TGKELFAQSI HNASYRCSKP FIAINCAALP PSLIESNLFG
YVEGAFTGAK KGGATGVFEK ANNGTLFLDE ISEMDLDLQS KLLRVLQEKE VTRIGGRKVI
PLNLRIIAAT NRNLEDMIQK GQFRRDLFFR LNVIEVKLPP LRDMKEDIPL LVNETIIKMN
SIFGKAIKGV DKEALEMLIN YDWPGNVREL YNCIERAFNL IGDDNYIRKK HLNFKFNNGN
GITAQNYMEE IEDTEGNPIN LDNDTGQRSL DDIVANYEKQ VIEAVLKEVK GIRAKAAKRL
NISPATLWRK MKKLNIEG
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