| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nther_1932 |
|---|
| Symbol | |
|---|
| ID | 6315833 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010718 |
|---|
| Strand | - |
|---|
| Start bp | 2032145 |
|---|
| End bp | 2033809 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 642644314 |
|---|
| Product | thiamine pyrophosphate protein TPP binding domain protein |
|---|
| Protein accession | YP_001918091 |
|---|
| Protein GI | 188586546 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACACTTA AAGTTTCACA AGTAATAGTC AATTGTTTGG AGAATTTAGG CATAGAACAT
GTTTTTGGTA TCCCTGGAAT ACATAATTTA GATATTTATG AACAACTGAT CAGAAGTGAA
ATACAGCATA TTACCGCTCG GCATGAAGAA GGTGCAGGTT ACATGGCAGA TGGTTATGCC
CGGGTTTCTG GTGATCCAAC TGTTTGTTTT GTTATTACTG GACCTGGCCT TACCAATATT
TCAACTGCTG TAGCACAAGC TTATTCTGAT TCTGTGCCAA TGATAATCAT TTCCACTCAG
GTACCGGATA GATTCCGGGG AAAAAATAAG GGTTTTTTAC ATGAATTGAA TAACTCTACC
AATTTCATGA GATCTTTTGT CAAAGAAAGT AGACAAATCA ATAGAAAGGA ATATGTAGCA
ATAGCTTTGA GAGAAGCCTA CCAACTTTCT ATTTCAGGTA GGGGTGGACC TGTGCATCTT
GAAATACCTA TAGATATTTT ACAGTCAGAG TTTGAGTATT ATCCGGAACC TCTCCATTTT
ACACGATACC CAGTGCAAGA ACCTTGGACT TGTAATCCGG ACAAAGATTC TTTGGAGGAG
GCCGTGAATC TGATTGAAAA CTCTGATAGT CCAGTAATTA TTGCAGGAGG GGGGAGTGCA
AATGGGAGGG ATCTGGTTAT TGATCTTGCA GAGAGATTGC AAGTACCCGT TTTACAAACA
GTTAGTGCTA AAGGGATAAT TCCAGAAGAT CATCCTCTAT GTATAGGAAC AAGGCTTCAC
CTCCCTTCAG CAGCTGAGAT GTTAAGGGAA AGTGATTTGG TAATAGCCAT TGGTTCAGAT
CTGTCCCTAG CAGACTTTTG GGACCGAGAA ATATTTTTCA ATAATTTAAT ACAAATCAAT
ATTGACTCTA GCAGTTATTA TGAAAAATGC TATCGTAATG TTTTTTTATA CGGAGATGTT
AGGTGTATTG TGGACTCCAT TTTATCTAAA TTAAAAAGCA GTCATCCTTG GGAATATAAA
GAATTTAATG AAAAAGAGGC TAGAAGTAGA TCATTAACAC AAAGTGTAGT TTCAAAAACC
AAAGCTGAAT TAGAGGAAGT TACAGGGATA AAAAATAATT TAAATCAATT ATTAGAGCTA
ATAAATGTGT TAAGGCTTGA ACTGCCGAGT ACTGGTATTT TAGTGACTGA TTTAACTACT
CCATCTTATC TAGCAATAAG TGAATTTCCT GCATACTATA CATCGACCTT TTTGCATCCA
GTTAATTTTG GTACTTTGGG ATATGCACTG CCAGCAGCAA TAGGAGCTTA CTTGAGTCTC
GGCTGTAAAA CAGTGGTTTT AACTGGTGAT GGGAGTATTC AATTTACTAT GCAAGAATTA
GCTGTAATAG CTGATTTACA GCTCCCCATA GTAATTGTGG TTTGGAATGA TCAAGGTTAT
GGTGAGATTA GGCGCAATCA AAAAGCTCGT CAATTTACTT CTACAATTGC CGTTGACCAT
ACTCCTCCGT CCTTTGAATT TTTAGCACAG GCTTATAACT TACAATTTTA TAATATTACA
GAGGAGCAAG AGTCTGAAAA AATTAAAGGT ATAATTCAAT GGGCACTGAG TTCTAATAAA
CCCTCGTTAA TAGAAATAAC TCCGGGTGGT GGTGTAGATG CTTAA
|
|---|
| Protein sequence | MTLKVSQVIV NCLENLGIEH VFGIPGIHNL DIYEQLIRSE IQHITARHEE GAGYMADGYA
RVSGDPTVCF VITGPGLTNI STAVAQAYSD SVPMIIISTQ VPDRFRGKNK GFLHELNNST
NFMRSFVKES RQINRKEYVA IALREAYQLS ISGRGGPVHL EIPIDILQSE FEYYPEPLHF
TRYPVQEPWT CNPDKDSLEE AVNLIENSDS PVIIAGGGSA NGRDLVIDLA ERLQVPVLQT
VSAKGIIPED HPLCIGTRLH LPSAAEMLRE SDLVIAIGSD LSLADFWDRE IFFNNLIQIN
IDSSSYYEKC YRNVFLYGDV RCIVDSILSK LKSSHPWEYK EFNEKEARSR SLTQSVVSKT
KAELEEVTGI KNNLNQLLEL INVLRLELPS TGILVTDLTT PSYLAISEFP AYYTSTFLHP
VNFGTLGYAL PAAIGAYLSL GCKTVVLTGD GSIQFTMQEL AVIADLQLPI VIVVWNDQGY
GEIRRNQKAR QFTSTIAVDH TPPSFEFLAQ AYNLQFYNIT EEQESEKIKG IIQWALSSNK
PSLIEITPGG GVDA
|
|---|
| |