| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nther_1732 |
|---|
| Symbol | |
|---|
| ID | 6317213 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010718 |
|---|
| Strand | - |
|---|
| Start bp | 1798780 |
|---|
| End bp | 1799697 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 642644108 |
|---|
| Product | shikimate 5-dehydrogenase |
|---|
| Protein accession | YP_001917894 |
|---|
| Protein GI | 188586349 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.035063 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTAA TAGAAAATGG TGGTGAGATT ATGGTTAAAA ATCCCAAAGG TTTACTGGCT
TTGATTGGTA ATCCAGTGGG GCACTCTCTT TCTCCTGTGA TGCACAATGC CGCTTTCCAC
GAGATGGGGC TAAATTGGTG TTATCATGCG TTTAATGTAG AATCTATTCA GTTGGCCGAA
GCGATTCATG GACTGAAAGC TTTAAATTTT AATGGAGGAA ATGTAACCTC TCCGTACAAA
GAGCAGGTTA TACCTTACTT AGATAATTTG ACTTGGGAAG CTAAGATAGC AGGTGCTGTT
AATACTTTGA TTTTGGATGA TCTAGAGGGG AGCATTACAG GGGACAATAC AGACGGAGAT
GGGTTTGTAA CTTATTTAGA AAAGGAAAAG AACTTCACTC TTAAAAATAA AGACATATGT
GTTATAGGAG CAGGTGGAGC TGCCAGGGCT ATCTGTATGG GAATGTTAAA AAGAGCACCA
AATAGCATTG TCATAGTTAA TCGAAACTTA AATAGAGCAG ATAAATTAGT AGAGAGATTA
AATCAAGCAA TAACAGAAGA TCAATTCAAA AAACTGTATG GACATGTAAA AACCCATTTA
AAAGCTGTTT CATTGGAACC CAGTTGTCTT ATTGGAGTTT TAAAAGAAAG CAATTTGATC
ATTAATTCTA TACCGACTGA CCCGCCCGAG TATATTGTGC AAAGTTTACA AACTCTTGAA
ACAATTGATA CAAGAACAGC AGTGGTCGAT TTACGCTATG GCGAACAACT GGGTCCCTAT
CTACAGCAAA TAGCTAGACC TGGTATAGAA ATATCCGATG GCTCGGGGAT GCTTTTATAT
CAGGGTATAT TGTCTTTTGA AAAATGGACC GGAGAAGAAG CTCCTGTTAA GATCATGAAA
AAAGCTCTAA ATTGGTAA
|
|---|
| Protein sequence | MNLIENGGEI MVKNPKGLLA LIGNPVGHSL SPVMHNAAFH EMGLNWCYHA FNVESIQLAE
AIHGLKALNF NGGNVTSPYK EQVIPYLDNL TWEAKIAGAV NTLILDDLEG SITGDNTDGD
GFVTYLEKEK NFTLKNKDIC VIGAGGAARA ICMGMLKRAP NSIVIVNRNL NRADKLVERL
NQAITEDQFK KLYGHVKTHL KAVSLEPSCL IGVLKESNLI INSIPTDPPE YIVQSLQTLE
TIDTRTAVVD LRYGEQLGPY LQQIARPGIE ISDGSGMLLY QGILSFEKWT GEEAPVKIMK
KALNW
|
|---|
| |