Gene Nther_1730 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNther_1730 
Symbol 
ID6315061 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNatranaerobius thermophilus JW/NM-WN-LF 
KingdomBacteria 
Replicon accessionNC_010718 
Strand
Start bp1795755 
End bp1796966 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content33% 
IMG OID642644106 
Producttype II secretion system protein 
Protein accessionYP_001917892 
Protein GI188586347 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1459] Type II secretory pathway, component PulF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.659448 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.0266314 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTAAAT ATTATTATAG AGCAAAAAGT TGGACAGGAG AAGAAATTAA GGGATTTATC 
ACTGCTGACA GTCGGGAAAC AGCCATATTA AATTTAACAA ATGAAAATTT TTGCTTAATT
GAACTTAAAA ATTATTCAAA GCGAGATTCG TTATTCGAAT ATATCAGAAA ATTTTTAGAT
CCAGTCACAT CTAAAGAATT AATGCTATTT ACTAGCCAAT TTTCCACAAT GGTTAGGTGT
GGGATTCCTG TTATTGAAAG TCTTGACTTG CAAACACAAC AATTAGGAAA TAAAAATCTG
ACCAGGGGAC TAACCATAGT AATAAAATCT CTAAACTCTG GTAAAAGTTT ACGAGAAGCT
TTTTCAGATG CCAGTGAAAC CTTTCCATGG CTTATTACGG AAATGGTGGG AGCTGGAGAA
GAATCGGGAC GCTTGGACGA AATTTTAGAT CGTTTGGCAT TACATTACGA ACAGGAATAT
ACTTTATCTC AAAAACTAAA ATCTGCTATT AGTTATCCAA TTTTACTAAT CATATTAGCT
ATGGTAGTAG TTTATATTTT ATTAACAGTA ATTTTCCCAC AATTTATCAA TTTGTTTGAA
GCTCAGGGTG CAGAGTTACC TTTTATCACG AGAATGATTT TTGATTCAGG GATTTGGATG
ACTGAAAACT TTTCACTTAT CTTTGTCCTG GCTATCTTGT TAATGTTTTT GTGCGTTTAT
ATATTTCGAA GATTTGGAGC TCGGCTGATA CTTGATTCTG TGAAATTAAA AATACCTGTT
TTTGGTGATT TAGTTATAAA AGCGAATGTT GCTCGTTTAA CTAGAACTGC CGCAATGCTT
TTGGAAAGTG GAGTCCCTCT GAAAAACTCC TTGAGTATTG GAAAAAATGT TGTCAGTAAT
CTAAAAATAC GAAGAGATAT AGATAAAATT ATTCACGGTA TACAGGAAGG CCAGAGGATG
ACATATTGTA TGTGTGGATT GGAAACTTTC CCAGATCTAT GCAACAGATT GATATCTGTA
GGAGAAGAAA CAGGGACCCT AGATGAAACA TTGAAACGAA TTGCTAATTT ATACGAGAGG
GAATTGAGTT TAAATGTCAA ACAAATAACG GCTTTAATAG AGCCATTAAT GATATTAATT
ATGTCCTTAA TAATCGGATT ACTTGTCTTG GCTGTTATCA TACCTGTTAT TGAATTATGG
AAAATTTTCT AA
 
Protein sequence
MIKYYYRAKS WTGEEIKGFI TADSRETAIL NLTNENFCLI ELKNYSKRDS LFEYIRKFLD 
PVTSKELMLF TSQFSTMVRC GIPVIESLDL QTQQLGNKNL TRGLTIVIKS LNSGKSLREA
FSDASETFPW LITEMVGAGE ESGRLDEILD RLALHYEQEY TLSQKLKSAI SYPILLIILA
MVVVYILLTV IFPQFINLFE AQGAELPFIT RMIFDSGIWM TENFSLIFVL AILLMFLCVY
IFRRFGARLI LDSVKLKIPV FGDLVIKANV ARLTRTAAML LESGVPLKNS LSIGKNVVSN
LKIRRDIDKI IHGIQEGQRM TYCMCGLETF PDLCNRLISV GEETGTLDET LKRIANLYER
ELSLNVKQIT ALIEPLMILI MSLIIGLLVL AVIIPVIELW KIF