| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nther_1668 |
|---|
| Symbol | |
|---|
| ID | 6315315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010718 |
|---|
| Strand | - |
|---|
| Start bp | 1744767 |
|---|
| End bp | 1745654 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 642644044 |
|---|
| Product | tyrosine recombinase XerD subunit |
|---|
| Protein accession | YP_001917830 |
|---|
| Protein GI | 188586285 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | [TIGR02224] tyrosine recombinase XerC
[TIGR02225] tyrosine recombinase XerD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.179488 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.0195248 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAA CCGTTCACGA ATTTATCTAT TATTTAAATG TTGAACGAGG TTTGTCAGAG
AACACGCTAA ACTCGTATTT GCGCGATCTA AAAAACTTTT TAGAGTTCCT TAACCAACAA
GGTGTAACAA AGTGGCAGGA AGTCAAACGT ACTCATATTA TGAAATATTT AATATTTATG
AAAGAAAAGG GTAAAGCTTC GGCCACCGTA ACTAGAAACA TAGCCTCTGT CCGGTCTTTC
TTTCAGTTTT TACTTCAGGA AGGCATGATT TCAGAGAATC CATCAACTGA TTTAGAAACT
CCCAAACAAG AAAAAAAATT GCCTGAAATT TTATCACCAC AGGAAGTGGA CAAACTTTTA
AACCAACCGG ATACTACCGA TTTCAAAGGT AAAAGAGATA AGGCAATGCT TGAGGTTTTG
TATGCAACAG GCATGAGAGT TAGTGAATTA ATATCATTGA ATGTTGAGCA TGTTGATAGT
AACAATGGGT ACATACTATG TAAAGGGAAA GGCGATAAGG AAAGAATTGT TCCTCTAGGT
AAAATGGCAA TAAAAAGTGT TTCTGATTAC ATATCAAAAA GCCGACCCCA GTTAAGAAAG
AACTTATCTG AACCAGCGTT ATTTTTAAAT CATCATGGGA AAAGATTATC TCGACAAGGC
TTTTGGAAAA TATTAAAAAA ATATGCTGAA AAAATTGGGA TTAAACAAAA AATCACACCT
CATACACTTA GACATTCATT TGCCACACAT TTACTTGAAA ATGGAGCTGA TTTAAGAGCA
GTTCAAGAAA TGTTGGGACA TTCAGATATT TCTACTACAC AGATATATAC TCACTTAACA
AAACAACGCC TAAAGGACGT TTATTCAAAA TCTCATCCCA GGGCTTAA
|
|---|
| Protein sequence | MEKTVHEFIY YLNVERGLSE NTLNSYLRDL KNFLEFLNQQ GVTKWQEVKR THIMKYLIFM
KEKGKASATV TRNIASVRSF FQFLLQEGMI SENPSTDLET PKQEKKLPEI LSPQEVDKLL
NQPDTTDFKG KRDKAMLEVL YATGMRVSEL ISLNVEHVDS NNGYILCKGK GDKERIVPLG
KMAIKSVSDY ISKSRPQLRK NLSEPALFLN HHGKRLSRQG FWKILKKYAE KIGIKQKITP
HTLRHSFATH LLENGADLRA VQEMLGHSDI STTQIYTHLT KQRLKDVYSK SHPRA
|
|---|
| |