Gene Nther_1638 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNther_1638 
Symbol 
ID6316528 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNatranaerobius thermophilus JW/NM-WN-LF 
KingdomBacteria 
Replicon accessionNC_010718 
Strand
Start bp1718111 
End bp1720228 
Gene Length2118 bp 
Protein Length705 aa 
Translation table11 
GC content35% 
IMG OID642644014 
Producthydroxymethylbutenyl pyrophosphate reductase 
Protein accessionYP_001917800 
Protein GI188586255 
COG category[I] Lipid transport and metabolism
[J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0539] Ribosomal protein S1
[COG0761] Penicillin tolerance protein 
TIGRFAM ID[TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
[TIGR00717] ribosomal protein S1 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value0.32153 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGAAATAT TGGTTGCAAA AGGTGCTGGT TTCTGTAGCG GTGTTAATAG AGCCTTAGAT 
AAGACAATCC AAGCTGTACA AACTGATACA TCACGGGACA TTCAAGTTTT TACCCTTGGC
CCCATTGTAC ATAATAAAGA GGTTATACAA AACTTAACAG AAAAAGGAAT AGGTATTATC
GAAAATTTAA CCCAGCTCCA ATCGAAGAAA TGTTTAAGTG AAGAAACTAA TAATTATGTC
GTTATTAGAA GTCATGGAGT TGGACCGGAA ACTTTTAAGA TGCTGAATAA TTTAAGTAAT
ACGGATGTGA TTGACGCTAC TTGTCCTTTT GTTAGGAAGG TACAACAGAA AGCAAGTAAA
TTATATCAAG ATGGGTATCA AATTTTCATA GTAGGTGATC CTAATCATCC GGAAGTGAAA
GGAATTAAAG AATGGACTGA TAATAATGCC ATTGTGATTG AAAAACCTGA ACAAGTTAAT
GATATAGAAA TATCTAATAA AACTGCTGTA GTTGCTCAAA CTACATTAAG AGAAGAAAAA
TTTAATGAAA TTGTGGAAAA AATACTTGAT AGAAACCCAA ATACAATAGT TCATAACACT
ATATGTGATG CCACTCAAAA ACGACAAACT GCCACTAAAG AGTTAGCAGG GCAAGTGGAT
GTCATGATTG TCGTTGGAGG ATATAACAGC TCAAATACCA AAAAACTAAA AGAGTTAGCT
GTCAAGGAAG GTGTACCTAC TTATCATATT GAGACAGCTA AGGAACTAAA AACAGATTGG
TTTTTGGGCT GTAAAAAGAT AGGTGTGACG GCAGGGGCCT CGACACCTGA TTGGACTATA
AAGGAGGTAG TTGGTAAAAT GAGAGAATTT GAAGAGCAAA ATGAAAACCT TAATACTAAT
TCAGATGAGT CAACTCAAGA AAGCCAAGAT GAATTAATGA AAGCAACAGA AGATTCGGCT
GACAAACTTG ACAGGGGACA AGTCGTTAAA GGAAAGGTAG TTAAAGTAAC AGAAGATGAA
GCAATGATTG ATGTAGGTTA TAAATTTGAA GGCTCAGTAC CAGTTAACGA AATGCCAATA
AAGGAAGGAG AATCTCTAGA GGATTTACTT TCTGAGGGAG ACGAAATTGA TGTTAAAGTG
GTGAAAGTTG ATGACGAAGA AGGACAATTA ATACTTTCTA AAAAATGGGC TGACAAAGAT
AAACAATGGG AGCAATTGGA ACAGCTTATG GAAAATGATG AAGAAATCAA AGCACAAGTG
ACAGAGGAAG TCAAAGGTGG TTTGGTCGTT GATTTAGGTC AATTACAAGG GTTTATACCA
GCCTCCCACG TAGACATACA TTATGTACCC GATTTAAGCA AGTATGTGGG AGAAGAATTG
AGACTGAAAC CCATAGAATT GGATCGTTCT AGAAATAAGA TAGTACTAAG CCAGAAAAAT
ATTTTAGAAC AGGAACAGGA AGAAAAGAAA AATAAAACCA TGGAAACTAT TACAGAAGGT
GATATCGTCG ACGGAACCGT TAAAAGGTTA ACCGATTTTG GAGCCTTCAT CGATATCGGT
GGAATTGATG GTTTATGTCA TATTTCTCAA ATTTCACATA GTAGAATTGA CCATCCTGAA
AGTGAATTAG AAACTGGGGA AAATGTTAAG GTAAAAGTAT TAAGCTTAGA TCCTGAAAAT
GAACGTATAT CATTAAGTAT TAAAGAAGCA CAGCCTGATC CCTTTGAAAC TTTTATGAAA
CAGTATAAAT CTGGAGATAT CGTTCAAGGC AAGGTTGTTA GAACTGTTAA TTTTGGTGCA
TTTATTGAAA TCACACCAGG TGTTGAAGGA CTTTGTCATA TTTCTCAATT ATCCGATGAT
CATGTTGCTA AAACCCAAGA TGTAGTTAAT GAGGGTGATC AAGTTACCGT CAAAATATTA
AGTATAGATG ATCAGCAGAA AAAGGTTAGT TTAAGTATCA AAGAAGCTCA GGGAAAAAGC
AAAAAAGAAC AAGAACAAGA AGAGTTTGCA AAATATCAGG ATAGTCAAGA GGAAGAAGAA
GGTGTGAAAT TAGGAGATAT GTTTGGTGAT GTACTAGAGG AAATAAAGGA AGATGATAAG
GATGATAAAT CGAAGTGA
 
Protein sequence
MEILVAKGAG FCSGVNRALD KTIQAVQTDT SRDIQVFTLG PIVHNKEVIQ NLTEKGIGII 
ENLTQLQSKK CLSEETNNYV VIRSHGVGPE TFKMLNNLSN TDVIDATCPF VRKVQQKASK
LYQDGYQIFI VGDPNHPEVK GIKEWTDNNA IVIEKPEQVN DIEISNKTAV VAQTTLREEK
FNEIVEKILD RNPNTIVHNT ICDATQKRQT ATKELAGQVD VMIVVGGYNS SNTKKLKELA
VKEGVPTYHI ETAKELKTDW FLGCKKIGVT AGASTPDWTI KEVVGKMREF EEQNENLNTN
SDESTQESQD ELMKATEDSA DKLDRGQVVK GKVVKVTEDE AMIDVGYKFE GSVPVNEMPI
KEGESLEDLL SEGDEIDVKV VKVDDEEGQL ILSKKWADKD KQWEQLEQLM ENDEEIKAQV
TEEVKGGLVV DLGQLQGFIP ASHVDIHYVP DLSKYVGEEL RLKPIELDRS RNKIVLSQKN
ILEQEQEEKK NKTMETITEG DIVDGTVKRL TDFGAFIDIG GIDGLCHISQ ISHSRIDHPE
SELETGENVK VKVLSLDPEN ERISLSIKEA QPDPFETFMK QYKSGDIVQG KVVRTVNFGA
FIEITPGVEG LCHISQLSDD HVAKTQDVVN EGDQVTVKIL SIDDQQKKVS LSIKEAQGKS
KKEQEQEEFA KYQDSQEEEE GVKLGDMFGD VLEEIKEDDK DDKSK