| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nther_1288 |
|---|
| Symbol | |
|---|
| ID | 6315181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010718 |
|---|
| Strand | + |
|---|
| Start bp | 1358998 |
|---|
| End bp | 1361187 |
|---|
| Gene Length | 2190 bp |
|---|
| Protein Length | 729 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 642643667 |
|---|
| Product | (p)ppGpp synthetase I, SpoT/RelA |
|---|
| Protein accession | YP_001917459 |
|---|
| Protein GI | 188585914 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0314087 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 78 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTAGATG CCGAACAGTT GTTTTTCAGT TTAAAAGAAA AAATAAAATC ATACTACCCT
CTTGACACAG ATTTAGAACA ACTGGATAGA GCCTTTGAGT TTGCCAGGAG CTATCATAAT
GATCAAAAAC GAGTTTCAGG TGAGGAATAT ATAGTTCATC CCATTGAAGT TGCCCTAGTG
CTAGCGGATT TAGAGTTGGA TCTAGATACC ATTAGTGCAG GTTTACTGCA CGATGTCATG
GAGGACACTC CTGCTACTAG AGAAGAGTTG GAGGAACTGT TCGGTGATGA AATTACTTTG
CTAGTAGATG GGGTAACAAA GCTTAGCAGA TTGAATTTTA AAACTAAAGA AGAACATCAG
GCAGAAAATT TAAGAAAAAT GTTCTTTGCC ATGGCAAATG ATATTAGAGT TATTCTAATA
AAATTAGCTG ATAGAACTCA TAATATGAGA ACTCTAAATT ATCTTCCAGA ACGAAAACAA
AAAGAAATTG CTAAAGAAAC TATGGAAATT TATGCTCCCC TTGCCAATCG TTTAGGTATA
TATAAAATTA AATGGGAATT GGAAGACCTG GCATTTCGAT ATATAGAACC TGAACAGTAT
TATTATTTAG CGGATAGAAT TGTACAGAAG AGAATGGAAA GAGAAGAATA TATTAAAAAA
ATAAAGGTTG ACCTTCGGGA TAAATTAAAA GAAATGGGCA TAGATGGTGA GATTCATGGA
AGACCCAAGC ATTTGTATAG TATTTATTCT AAAATGAAAA AAACAGGAAA AGATCTTAAT
GAAATCTATG ATTTAATCGC CCTAAGGATT ATCGTTAATA ATGTAAAAGA TTGCTATGCA
GTATTAGGAA CTGTCCATAC TATGTGGAAG CCCGTACCTG GTCGTTTTAA GGATTATATT
GCAGTTCCCA AGTCTAATAT GTATCAATCT TTGCATACAA CGGTGTTATG TCCACAAGGG
AATCTGGTAG AAATACAAAT CAGGACATGG GATATGCATA AAACAGCAGA GTATGGTATT
GCAGCTCACT GGAAATACAA AGAAAATACG GACGACAAGA AGTTTGCTGA AAAAGTGTCC
TGGTTTAGAC AGTTGCTAGA ATGGCAGCAA GAAACCAGTG ATGCCTTAGA GTTTATGGAG
CACTTAAAAG TTGATCTTTT CTCCGATGAA GTGTTTGTCT TTACTCCTAA AGGTGATGTG
ATTGACTTGC CCAGCGGCTC TACACCTATT GATTTTGCTT ATAGGATTCA TACCGATATA
GGTAATACTT GTATTGGAGC TAAAATAAGC GGTAGAATGG TCTCTCTAGA TTATCAGTTA
CAAACGGGGG ATGTAGTTGA AATTTTAACT TCTAAGCATG CCACCCCGAG TCGTGACTGG
CTAAACTTGG TTAAAAGCTC TCAGGCTAAA AATAAGATTA AACAATGGTT TAAACGTCAA
AGCAGAGATG AAAATATTCA ACGAGGAAGA GAAATGATTG AAAGGGAAGC CAAGCGCTTA
AAGATCTTTC CTGAGAAGTA TATTAAAGAT GAACAAGTTC AAGAAGAAGT GGCTGAAAAG
TTTAATATGA AGAGTTATGA TGATGTTTTA GCCGCTTTAG GTTATGGTGG TATTACAGTA
AATCAAGTTA TTGGAAAATA CCAGAGTATT TATAAAGCAA ATCGGGAAGA GTTAGAAGAA
GAGGAAGATC AGGTAGAGGA CTTCTCCAAG TATCTAAAAG AAGATCAAAG TCTCAAAAAA
ACCAAAGACA GTATAAGCGT ACAGGGTCTT GAAAATATTG CCACTAGATT TGCAAAATGT
TGCCATCCTT TACCAGGAGA ACATATTGTA GGTTTTATAA CACGAACTAG AGGTATCACT
ATCCATCGCC ATGACTGTCC GAATGCTCAA CATAAGCTTA AGAATAATGA ACGCACTGTA
CCAGTTCACT GGGATGAAAG TGGAGATAAT GACTTTCAAG TTAGCGTTTC CGTTTTTGCT
GTAGATCGCC AAAGAATAGT TCAAGATATT ATGAAAGCCT TGGGCGATTC TAAAATTGCC
GTGACTGCTA TAGAAGCTAA GACGGACAAA AATCAAGTTG CAAAAATCAA TTTAACTGTA
TTAATCAAGA ATCACTCACA CTTACAATTT GTGATTGACA AACTACAGAA TATTCAGGAT
GTATTGAAAG TACAAAGGGA TAACCCCTAG
|
|---|
| Protein sequence | MLDAEQLFFS LKEKIKSYYP LDTDLEQLDR AFEFARSYHN DQKRVSGEEY IVHPIEVALV
LADLELDLDT ISAGLLHDVM EDTPATREEL EELFGDEITL LVDGVTKLSR LNFKTKEEHQ
AENLRKMFFA MANDIRVILI KLADRTHNMR TLNYLPERKQ KEIAKETMEI YAPLANRLGI
YKIKWELEDL AFRYIEPEQY YYLADRIVQK RMEREEYIKK IKVDLRDKLK EMGIDGEIHG
RPKHLYSIYS KMKKTGKDLN EIYDLIALRI IVNNVKDCYA VLGTVHTMWK PVPGRFKDYI
AVPKSNMYQS LHTTVLCPQG NLVEIQIRTW DMHKTAEYGI AAHWKYKENT DDKKFAEKVS
WFRQLLEWQQ ETSDALEFME HLKVDLFSDE VFVFTPKGDV IDLPSGSTPI DFAYRIHTDI
GNTCIGAKIS GRMVSLDYQL QTGDVVEILT SKHATPSRDW LNLVKSSQAK NKIKQWFKRQ
SRDENIQRGR EMIEREAKRL KIFPEKYIKD EQVQEEVAEK FNMKSYDDVL AALGYGGITV
NQVIGKYQSI YKANREELEE EEDQVEDFSK YLKEDQSLKK TKDSISVQGL ENIATRFAKC
CHPLPGEHIV GFITRTRGIT IHRHDCPNAQ HKLKNNERTV PVHWDESGDN DFQVSVSVFA
VDRQRIVQDI MKALGDSKIA VTAIEAKTDK NQVAKINLTV LIKNHSHLQF VIDKLQNIQD
VLKVQRDNP
|
|---|
| |