Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nther_1215 |
Symbol | |
ID | 6316840 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
Kingdom | Bacteria |
Replicon accession | NC_010718 |
Strand | + |
Start bp | 1288374 |
End bp | 1289456 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 642643588 |
Product | RNA polymerase, sigma 70 subunit, RpoD family |
Protein accession | YP_001917386 |
Protein GI | 188585841 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000000000256701 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.00656648 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGCAGAGA AAAATCAAAA CCAAAAATTA GAACAAATTA AAGATGAACT GTTAAAAGTG GGAAAAGAAC GAGGATTTCT CACCTATAAA GAAATTATGG ATCAGTTGTC AGAATTCCAG CTTTCCAGCG ACCAAATAGA TGAATTTTAT GAAGTACTGA CTCAGGCCGG TATAGATGTG GTGGATGCTA TTGGAGAGGT GGATCCAGAT GACCCCACAA AAGCGGAGCT GGACTTATCA CTTCCTGAAG GGGTAGAAGT AAGTGATCCG GTACGTATGT ACTTAAAAGA GATCGGAAAA ATCCCCCTTC TATCTCCCGA CGACGAAATA GAACTTGCCA AGAAAATTGA AGAGGGAGAT GAAGGAGCTA AAAGAAAATT GGCTGAAGCC AATTTACGCT TAGTGGTCAG TATTGCTAAA AAATACGTTG GTCGCGGGAT GTTATTTCTG GACTTGATTC AAGAAGGTAA TTTGGGACTG ATAAAAGCAG TAGAAAAATT TGATTACCGA AAAGGTTACA AGTTTAGTAC TTATGCTACA TGGTGGATAC GTCAAGCAAT TACAAGGGCC ATAGCAGATC AAGCTAGGAC TATTAGAATA CCTGTCCATA TGGTGGAAAC TATCAATAAA TTGATTAGAG TTTCGCGTCA ACTCGTACAG GAACTGGGTA GGGAACCTTT ACCTGAAGAA ATTGCAGAAC AAATGGATAT GAGTGAAGAC AAGGTCAGGG AAATCTTAAA AATTGCCCAG GAACCCGTAA GTTTAGAGAC TCCTATAGGA GAAGAGGATG ACAGTCACTT AGGAGACTTT ATAGAAGACC AGGATGCTAA ACCACCTGCA GATGCTGCTG CTTTTGAACT TCTTAAAGGA CAATTAGAAG AAGTATTGGA TAGTTTAACA CCCCGTGAGC AAAAAGTATT GAGACTTAGA TTTGGATTAG ATGACGGAAA AACTCGAACT CTAGAAGAGG TGGGTAAACA CTTTGGTGTC ACTAGGGAAA GGATTAGACA AATAGAAGCT AAAGCCTTGC GTAAATTACG TCACCCTATG AGAAGTAAAC GCCTTAAGGA TTACTTAGAT TAA
|
Protein sequence | MAEKNQNQKL EQIKDELLKV GKERGFLTYK EIMDQLSEFQ LSSDQIDEFY EVLTQAGIDV VDAIGEVDPD DPTKAELDLS LPEGVEVSDP VRMYLKEIGK IPLLSPDDEI ELAKKIEEGD EGAKRKLAEA NLRLVVSIAK KYVGRGMLFL DLIQEGNLGL IKAVEKFDYR KGYKFSTYAT WWIRQAITRA IADQARTIRI PVHMVETINK LIRVSRQLVQ ELGREPLPEE IAEQMDMSED KVREILKIAQ EPVSLETPIG EEDDSHLGDF IEDQDAKPPA DAAAFELLKG QLEEVLDSLT PREQKVLRLR FGLDDGKTRT LEEVGKHFGV TRERIRQIEA KALRKLRHPM RSKRLKDYLD
|
| |