| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nther_0953 |
|---|
| Symbol | |
|---|
| ID | 6314930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010718 |
|---|
| Strand | - |
|---|
| Start bp | 1009892 |
|---|
| End bp | 1010548 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 642643325 |
|---|
| Product | Rhomboid family protein |
|---|
| Protein accession | YP_001917125 |
|---|
| Protein GI | 188585580 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00030487 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATACCAT TAAAAGACAA TATTAGGTCA AGAAAGTTAC CTGTAATGAC GGTAGGATTA
ATCATTCTTA ATATTTGGAT ATTTTTTCAG CAAACTCAAC TACCACCTGA TCAGCTCCAG
CTCCTAATAG CAGAGTTTGG ATTCATTCCA AAAAGAATAG TACTAGCTTA TAACCAAGGC
GAACTTTCTT TACTACCTCT AGCCACACCT GTAACTTCTG CCTTTTTTCA CGGAAATTTA
ATACATTTAG CCGGCAATAT GTTATATCTT TGGGTTTTTG GTGATAATGT AGAAGATAAA
CTGGGTAGTT TTAGATTTTT GTTATTTTAC CTAGTAGCTG CAATCTTTGG TAGCCTGGGC
CATCTATTGA GTGATCCTTT ATCAGTTCAA CCTGCCATAG GTGCTAGTGG TGCCGTTGCC
GGAGTACTAG GAGCTTATTT TATTTTTTTC CCTTACGCTA AAGTTTTTAC ACTAGTCCCC
ATCGGTATTT TTATTACGTT TATTCATCTT CCGGCTGTTA TTTTTCTGGG CATTTGGATA
TTAATCCAAG GTGCCAATGC CGCATTGCCT GCCCCTGGAG AAGCTGTCTC TGTAGCCTGG
TGGGCACATA TAAGTGGTTT CATAATGGGT GTAATTTATT CATTATTCAA AAAATAA
|
|---|
| Protein sequence | MIPLKDNIRS RKLPVMTVGL IILNIWIFFQ QTQLPPDQLQ LLIAEFGFIP KRIVLAYNQG
ELSLLPLATP VTSAFFHGNL IHLAGNMLYL WVFGDNVEDK LGSFRFLLFY LVAAIFGSLG
HLLSDPLSVQ PAIGASGAVA GVLGAYFIFF PYAKVFTLVP IGIFITFIHL PAVIFLGIWI
LIQGANAALP APGEAVSVAW WAHISGFIMG VIYSLFKK
|
|---|
| |