Gene Nther_0557 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNther_0557 
Symbol 
ID6314667 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNatranaerobius thermophilus JW/NM-WN-LF 
KingdomBacteria 
Replicon accessionNC_010718 
Strand
Start bp580017 
End bp583544 
Gene Length3528 bp 
Protein Length1175 aa 
Translation table11 
GC content36% 
IMG OID642642941 
Productputative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme 
Protein accessionYP_001916741 
Protein GI188585196 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0366] Glycosidases
[COG1640] 4-alpha-glucanotransferase 
TIGRFAM ID[TIGR00217] 4-alpha-glucanotransferase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.641532 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones55 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAAACAC CTATTAAGCT GTTTCATGAC TCCCATAATC CTTTGTATCG AAAACCATTT 
GGAGCAGTCT CTATTAACAA AGAGATCTTA TTAAGGCTTT ATATTCGTAC TACTAACCCA
AAGGAACTGC AAGTCTTGGC TAATTGCATT GACGATCAAG GTAACAAAGT GGCGTATCCC
ATGTATCAAA CTGGAATTTC GGAAAATGAC TGCGATCAAA TTGACTACGA TAATGGCAAT
GGTAGTATTT ATAAAGAAGA ACTTACAGGG TATTTTTATG AAGCATCCAT CAAATCACCT
GATACACCAG GATTATTTTG GTATACTTTT ACAGTCGTAA GTAATGAAAC TAAAGTTTAT
TTCGGTAACA ATCAGGAATT ATCAGGAGGC CCAGGCCAAG AAAGTCACCA AGAACCTTTA
GGTTATCAAG TAACTGTTCA CGAGCAAGAT TTACAAATAC CCAATTGGCT AAAAGATGCT
GTCATTTATC AAATATTTAT TGATAGATTT AATAATGGAA ATGAAGATGG TACGGTATCT
AATCCTAAGA GAAATAGTTT TTTACATTCC CACTGGGATA ATTCGCCTCT GTATGTTCGA
GACCAAGAGG GAAAAATTTT GCGATGGGAT TTTTTTGGAG GAAATTTAGA GGGAGTCAGG
CAAAAACTGG TTTATCTCAA AAAATTAGGT GTTTCCATTA TCTATTTTAA TCCTATTTTC
GAAGCGGAAA GCAATCATAG ATATGATGTA GGTGACTATC ACAAAATTGA TGCGATGATA
GGAAACAATG AGGAATTTCG TCAATTTTGC AAAGAAGCTG AAAACATGAA CATTAAGGTT
ATCTTAGACG GTGTCTTTAG TCACACGGGA AGTAATAGCC TTTATTTTAA CAAATATGGA
AGCTATCCAT CATTAGGGGC ATATCAATCT AAAGAATCTC CTTATTATAA TTGGTACCGC
TTTTTAGAAC ATCCTCACAA ATACGAAAGT TGGTGGGGAA TTGACAATCT CCCAAATGTA
GAAGAACATA ATCCTGATTA TCAAAACTTT ATTATTAGTG ATGACAACAG TGTTTTAAAG
CACTGGTTCC GGCACGGTGC AAAGGGATGG AGATTAGATG TAATTGATGA AATCCCTGAT
GAGTTTTTAC AAAATTTCTA TCAGACTTTA AAATCTCAAG ATCCAGAAAG TATTGTTATT
GGAGAAGTGT GGGAAGATGC CTCCAATAAA ATTAGTTACG ACAGGCGGAG GCAATATTTA
TTGGGAAAAG AGTTGGATTC AGTCACAAAT TATCCTTTAA GAAACATAAT GCTGGATTTT
GTATTAGATC ATAACAGCTC TCAAGAGACT GCTCGAAGAG TTTTGTCCCT CATGGAAAAT
TACCCTGAAG ATTATTTTTA CACAGCCATG AATTTACTCG GAAGTCATGA TGTCGAAAGG
GTTTTGACTG TCTTAAAAGA CAATACTCCT GATGATTTAA GAGAAGATTT GGACAGTATA
GCTAAAAAAC GTCTCAAGTT GTTGACTCTC TGGCAGATGA CTTTCCCTGG GATACCTTCA
ATTTATTACG GAGACGAAGC AGGATTAGAG GGCTATCAAG ACCCTGACAA TCGAAAGACT
TATCCCTGGG GCAATGAGGA TCAGGAATTG GTTTCATGGT TTAGAAAATT AACAGCTATA
AGAAACCACT ACGATGTATT ACGAACTGGC GATTTTTCCC TGGTCACTAC AGTCAGTGAT
TCTCAACAAG ATCTGGATAA GGACATTTTA CTGTATCGAC GTAAAATTTC TCAGAACCAA
GATAGATTCC ACCAAAAAAG ATTAAACAAT ACAGCTGTAA TTGTTCTAAA TAGAAATCCC
AGAGAACGAA AGAATCTAAA AATTCATATC TCAGAAGTTA CTGGCACGAA TAGTGGTCAA
AGCTTTGTAG ATCCCTTAGA GGATTATAAC ATTGTTTCGA CTGACAATGA TGGATATCTT
GAGATCACCT TAGAACCTTT AGAATGCAAG TTACTATTAG CCGATAGATA TCAAGGAAAC
GCAAATTTTG AAAGGAACGC TGGTATTTTA CTTCACCCTA CTTCATTACC TTCTCCTTAT
GGAATTGGTG ATTTGGGTAA AGAAGCCTAC AGATTTGTTG ATTTTCTAAG GGACTCTGGT
CAAAAATTTT GGCAGATTCT CCCTCTGAAC CCTCCAGGTT ACGGAAATTC TCCCTATCAG
TGCTTTTCTG CTTTTGCCGG AAATCCTTTG TTAATAAGCT TAGATAAGCT GACTGAACAA
GGGCTGCTTA CTCAGAATAG ACTTAGTGAA GCTCAACAGA AACAGACTAA CTATGTCGAC
TATGAAAAGA CTTATCAATT GAAAGAACCT TTATTACAAG CTGCCTTCGA AAATTTCATT
GATAATGGTG GGAAAGAATC CCATGATTTT AGAGAGTTTA TCTCTCAGCA CAGTTACTGG
TTAGAAGATT ACGCTATGTT TATGGCATTA AAAGCTCACT TCAATTATAA ACCTTGGCAT
CAGTGGGACG ATGAAGAAAT TATCTGGAGA AAACCACATG CACTAGCAAA ATACAGAGAA
AAATTAGCTA ATACTATTGA TTATCACAAA TTTTTGCAGT ATATATTTTT CAATCAATGG
CATTCATTAA AAAACTATAC CAACAAACAA AATATACATA TTATTGGTGA CCTTCCCATT
TTCGTGGCTC ATGATAGCAG TGATGTTTGG GCACTAAAAC ATTACTTTGA GTTGGATTCC
CAAGGTAAAC CGGCAAAAAA GGCTGGAGTA CCACCAGATT ACTTTAGTGA AAATGGACAA
TTGTGGGGCA ATCCTCATTA CGACTGGAAC GAACTAGAAC AAGATAATTA CAGGTGGTGG
ATTGAACGAA TTAAAGTCCT AATGCAGTTA TCCGATGTAG TACGCATTGA CCATTTTAGA
GGTTTTGAAG CTTATTGGGA AATACCTGGT TCAGAAGACA CGGCAGTAAA TGGCACATGG
GTGAAAGGAC CCGGAGAAAA GTTTTTTAAT ACCATAGAAA GTAATCTCCA GGATAAGTAT
GACCCGCAAA TAATTGCCGA GGATCTAGGA GTAATTACCT CAGAAGTAGA GGAACTTAAA
TTAAAATTTG ATTATCCTGG TATGAGTATT TTACAATTTG CAATCCATAA CGAGCCAGAT
CACAAATTCA GAGTCCCCTT GTACAACAAA AATACTGTAG CCTACACTGG AACTCACGAC
AATGACACTA TAGTAGGTTG GCTTGAAAAT GAATTGGGTG AGAGATTTTC TTCCCAACAA
GAACAAATCA ATGCCGCCTG GAAACACATC GAAATGGTAT ATGAAAGTGA TGCCCGCTCA
GCAATTATTC CTTTACAAGA TTTTTTAGGA TTAAATAGTA ATCACAGAAT GAATACTCCA
GGAACCATTG GTGATAATTG GGAATGGCGT TTTTGCTGGG ATCAAATTGG GCAAGAGCTT
TCTGATAAAA TTAATAATTT GGTTTATAAA ACTAAAAGAA AACCGTAA
 
Protein sequence
METPIKLFHD SHNPLYRKPF GAVSINKEIL LRLYIRTTNP KELQVLANCI DDQGNKVAYP 
MYQTGISEND CDQIDYDNGN GSIYKEELTG YFYEASIKSP DTPGLFWYTF TVVSNETKVY
FGNNQELSGG PGQESHQEPL GYQVTVHEQD LQIPNWLKDA VIYQIFIDRF NNGNEDGTVS
NPKRNSFLHS HWDNSPLYVR DQEGKILRWD FFGGNLEGVR QKLVYLKKLG VSIIYFNPIF
EAESNHRYDV GDYHKIDAMI GNNEEFRQFC KEAENMNIKV ILDGVFSHTG SNSLYFNKYG
SYPSLGAYQS KESPYYNWYR FLEHPHKYES WWGIDNLPNV EEHNPDYQNF IISDDNSVLK
HWFRHGAKGW RLDVIDEIPD EFLQNFYQTL KSQDPESIVI GEVWEDASNK ISYDRRRQYL
LGKELDSVTN YPLRNIMLDF VLDHNSSQET ARRVLSLMEN YPEDYFYTAM NLLGSHDVER
VLTVLKDNTP DDLREDLDSI AKKRLKLLTL WQMTFPGIPS IYYGDEAGLE GYQDPDNRKT
YPWGNEDQEL VSWFRKLTAI RNHYDVLRTG DFSLVTTVSD SQQDLDKDIL LYRRKISQNQ
DRFHQKRLNN TAVIVLNRNP RERKNLKIHI SEVTGTNSGQ SFVDPLEDYN IVSTDNDGYL
EITLEPLECK LLLADRYQGN ANFERNAGIL LHPTSLPSPY GIGDLGKEAY RFVDFLRDSG
QKFWQILPLN PPGYGNSPYQ CFSAFAGNPL LISLDKLTEQ GLLTQNRLSE AQQKQTNYVD
YEKTYQLKEP LLQAAFENFI DNGGKESHDF REFISQHSYW LEDYAMFMAL KAHFNYKPWH
QWDDEEIIWR KPHALAKYRE KLANTIDYHK FLQYIFFNQW HSLKNYTNKQ NIHIIGDLPI
FVAHDSSDVW ALKHYFELDS QGKPAKKAGV PPDYFSENGQ LWGNPHYDWN ELEQDNYRWW
IERIKVLMQL SDVVRIDHFR GFEAYWEIPG SEDTAVNGTW VKGPGEKFFN TIESNLQDKY
DPQIIAEDLG VITSEVEELK LKFDYPGMSI LQFAIHNEPD HKFRVPLYNK NTVAYTGTHD
NDTIVGWLEN ELGERFSSQQ EQINAAWKHI EMVYESDARS AIIPLQDFLG LNSNHRMNTP
GTIGDNWEWR FCWDQIGQEL SDKINNLVYK TKRKP