| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nther_0187 |
|---|
| Symbol | |
|---|
| ID | 6315945 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Natranaerobius thermophilus JW/NM-WN-LF |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010718 |
|---|
| Strand | + |
|---|
| Start bp | 211298 |
|---|
| End bp | 214954 |
|---|
| Gene Length | 3657 bp |
|---|
| Protein Length | 1218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 642642570 |
|---|
| Product | DNA-directed RNA polymerase, beta' subunit |
|---|
| Protein accession | YP_001916374 |
|---|
| Protein GI | 188584829 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00978383 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.014525 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATAGATG TCAATAGTTT TAATGCCCTA AAAATTGGAT TGGCATCACC TGAACAAATC
AGATCATGGT CTAAAGGTGA AGTTAAAAAA CCTGAGACCA TAAATTATCG AACTCTGAAG
CCAGAAAAAG AAGGACTGTT TTGTGAAAAG ATTTTTGGTC CCCAGAAAGA TTGGGAATGC
CATTGTGGAA AATACAAACG AGTTCGTTAT AAAGGTATTG TTTGTGACAG GTGCGGTGTA
GAAGTTACCC AGTCTAAGGT ACGACGTGAA AGAATGGGAC ATATAGAATT GGCTGCACCT
GTCAGCCACA TCTGGTATTT TAAAGGCATT CCAAGTCGAT TGGGACTATT GTTAAACATG
TCCCCACGAG CTTTAGAAAA GGTACTGTAC TTTGCATCAT ACGTAGTCAT TGACCCAGGG
GAAACTTCTC TGGCTAAAAA GCAATTATTA ACTGAAACAG AATACCGGGA ATATTACGAT
AAATTTGAAA GCCAATTCAA AAAGGGCAAA GGCTTCAAAG CCATGATGGG TGCTGAAGCC
ATTAAAGAGC TTTTAAAAGA ACTTGATTTA GAAGCACTTA CAAAAGAATT GAGAAATGAC
TTAAAAACTG CAAAAGGGCA AAAGAAGGTT AGGACTGTTC GTCGTTTGGA AGTTGCAGAA
TCCTTTAGAA AATCTGGTAA TAAACCAGAA TGGATGATTC TCGATGTCAT TCCAGTAATC
CCTCCAGATC TTCGCCCTAT GGTACAGTTG GATGGTGGAC GTTTTGCAAC TTCAGACCTT
AACGACTTAT ATCGTCGGGT AATTAACAGA AACAACCGTC TCAAAAGACT TCTGAATTTA
GGGGCACCAG ATATTATTGT AAGAAATGAA AAACGTATGC TCCAAGAAGC AGTTGATGCA
TTGATTGATA ACGGTCGTAG AGGTCGAGCT GTAACCGGGC CAGGCAACAG ACCACTCAAA
TCTTTGAGTG ACATGCTTAA AGGTAAACAA GGTAGATTCC GTCAAAACCT ATTGGGTAAG
CGTGTTGATT ACTCTGGAAG GTCTGTTATT GTTGTTGGTC CTGAACTCAA GATATATCAA
TGTGGACTTC CTAAAGAAAT GGCTTTAGAA CTGTTTAAAC CTTTTGTAAT GAAAAGGCTT
GTAGAAAAAG AACTATCTCA TAACATTAAG AGCGCCAAAA GAATGGTTGA AAAAGTAAGG
CCAGAGGTTT GGGACGTTCT AGAAGAAGTA ATCAAAGAAC ATCCTGTTCT GTTAAATAGG
GCACCCACTC TACATCGATT GGGGATCCAA GCCTTTGAAC CAGTTTTAAT AGAAGGTCGA
GCAATTCAAA TACATCCACT GGTCTGTCCT GCCTATAATG CGGACTTCGA TGGTGACCAG
ATGGCTGTCC ACTTACCGTT ATCAGCTGAA GCCCAGGCTG AAGCTCGTAT ATTGATGTTG
GCAAGTCAGA ACATCTTGAA TCCAAAAGAT GGTAGCCCTG TGGCTACACC TACCCAAGAC
ATGGTATTGG GTAGCTACTA CTTGACTTTA GAAAACACTT CAGACTTTAA AAATGATGCC
TATTTCAGCA GTCCGGCAGA AGCTGTTATG GCTTTCAGAC AAAAAGATAT CGACATGCAA
GAGCCAATTG CTGTTGATGT TAGGAACTAC GAGAAGAAGG ATTTCAGCTT ACCAGAAAAT
AACAAACCAT CGGATAGTAA TCTGTTAATT ACTACTGTTG GAAAGATCAT ATTTAATGAA
ATATTCCCCG AAGACTTTCC TTACGTAAAT GGCGAAAAGC CAGGTTTAAA CGAATATGAC
TGGTTGAAAT CAGGGGAACG AATTGAGGAT AAACTTAAGC AACGCGAACC AAGAGAGGCT
ATTCAAAAAG GATCTCTAGG AGATTTGGTT GGCCATTGTT ATCGCAAATA CGGTAGTACA
AAAACAGCTA GCATCCTAGA TAAAATGAAG GAAGTAGGCT ACTCTTATGC AACTAAAGCA
GGAGTTACCA TAGGAATCAC TGATGTGGCA GTACCTGAGA AAAAACATGA GATAATTTCG
GATGCTGAAG GGAAAGTAGA TGAGGTTGAA AAACAACATC ATCGCGGTTT AATCACTCCA
CAAGAAAGAT ATACTCGGGT TATTGATATT TGGAACAACG CTAAAGACAG TGTAACTGGT
GCTGTTATGG ATAACCTGGA TATTTTCAAT CCCATCTATA TGATGGCTAC CTCGGGTGCA
CGAGGTAACA TTTCACAAAT TACCCAGTTA GCTGGGATGC GGGGCTTGAT GGCTGATCCT
ACTGGTAGAA TTATTGACCT ACCAATTAAA ACAAACTTTA GGGAAGGATT GACAGTTCTA
GAATACTTTA ATTCTACCCA CGGTGCCAGA AAAGGTCTAG CAGATACAGC CCTAAAAACA
GCCGATTCAG GTTATTTAAC CAGGCGTTTG GTTGATGTAA GTCAGGATGT CATCGTAAGA
GAAGAAGATT GTGGCGAGAC TGACGGAGTA GAAGTAGGAG CTATAACCAA TGGAAATGAA
ATTATAGAAG GTATAGGAGA TAGAGTAGTC GGTCGTTTTG CAGCAGCGGA CATTAGAGAT
CGTCAGGGCA ATATGATAGT CAATCGCAAT GAATTAATAA CTGAAGACGC AGCCGAGCAA
ATTCAAGAAG CCAAGCTAGA TCAAGTTCCT ATCAGGTCAG TTCTAACTTG TAAAACTAAA
AATGGAGTTT GTGTCAAATG TTATGGAAGA GACCTGGCCA CTGGTGCAGT TGCCAATGTG
GGAGAAGCTG TAGGAATTAT TGCCGCCCAG TCAATTGGTG AACCGGGAAC TCAGTTGACA
ATGCGTACTT TCCATACAGG AGGAGTTGCA GGAGACGACA TCACTCAAGG TCTACCAAGG
ATTGAAGAAC TGTTTGAAGC TAGAAAACCA AAAGGTTTGG CAGTTATCAG TGAAATTGAT
GGTCGTATTA CAGTTAAAAC TGAGCACAAT AAACGAAAAG TAATCGTAAC CCCTGAAAAA
GGCGAACAAA AGAGTTATAA TATCCCTTAT GGGGCACGGT TGAAAGTAAA GGATGGAGAT
GAAATCAACG CCGGAGATGA AATTACCGAA GGTTCGATTA ACCCTCATGA TTTATTGAAA
ATCAAAGGAG TCCGAGGAGT ACAACTTTAT ATTCTTCAAG AGGTTCAAAA AGTTTATCGA
ATGCAGGGCG TTGATATTAG TGATAAGCAT ATCGAGATTA TTATCCGTCA AATGCTAAAG
AAAGTAAGAA TTGAAGAAGC AGGAGATACA GAATTGTTAC CAGGCAGTTA TGTAGACTTC
TTTGATTTTG AAAAGGTTAA TGAAAGAATA AAAGAAGAAG GGGGAGAGCC TGCTAAAGCT
AAATCCTTAC TCCTAGGAAT TACTAAGGCT TCTCTCGCAA CAGACAGCTT CTTGTCTGCT
GCATCTTTCC AGGAAACTAC TAGGGTGTTA ACCGAAGCAG CAATCAAAGG AAAAGTCGAC
CCATTAATTG GATTGAAAGA AAATGTTATT ATCGGTAAAT TGGTACCTGC TGGTACTGGA
ATGCCCCATT ATAGAAATAT CGACCTAGCT TATAACGATG AAGAGAATGA AGCCCAAAGT
GATAAATCAC AAGACGAACA AGAAATTGGA GAAATAACAG TTGACATGGG GGAATAA
|
|---|
| Protein sequence | MIDVNSFNAL KIGLASPEQI RSWSKGEVKK PETINYRTLK PEKEGLFCEK IFGPQKDWEC
HCGKYKRVRY KGIVCDRCGV EVTQSKVRRE RMGHIELAAP VSHIWYFKGI PSRLGLLLNM
SPRALEKVLY FASYVVIDPG ETSLAKKQLL TETEYREYYD KFESQFKKGK GFKAMMGAEA
IKELLKELDL EALTKELRND LKTAKGQKKV RTVRRLEVAE SFRKSGNKPE WMILDVIPVI
PPDLRPMVQL DGGRFATSDL NDLYRRVINR NNRLKRLLNL GAPDIIVRNE KRMLQEAVDA
LIDNGRRGRA VTGPGNRPLK SLSDMLKGKQ GRFRQNLLGK RVDYSGRSVI VVGPELKIYQ
CGLPKEMALE LFKPFVMKRL VEKELSHNIK SAKRMVEKVR PEVWDVLEEV IKEHPVLLNR
APTLHRLGIQ AFEPVLIEGR AIQIHPLVCP AYNADFDGDQ MAVHLPLSAE AQAEARILML
ASQNILNPKD GSPVATPTQD MVLGSYYLTL ENTSDFKNDA YFSSPAEAVM AFRQKDIDMQ
EPIAVDVRNY EKKDFSLPEN NKPSDSNLLI TTVGKIIFNE IFPEDFPYVN GEKPGLNEYD
WLKSGERIED KLKQREPREA IQKGSLGDLV GHCYRKYGST KTASILDKMK EVGYSYATKA
GVTIGITDVA VPEKKHEIIS DAEGKVDEVE KQHHRGLITP QERYTRVIDI WNNAKDSVTG
AVMDNLDIFN PIYMMATSGA RGNISQITQL AGMRGLMADP TGRIIDLPIK TNFREGLTVL
EYFNSTHGAR KGLADTALKT ADSGYLTRRL VDVSQDVIVR EEDCGETDGV EVGAITNGNE
IIEGIGDRVV GRFAAADIRD RQGNMIVNRN ELITEDAAEQ IQEAKLDQVP IRSVLTCKTK
NGVCVKCYGR DLATGAVANV GEAVGIIAAQ SIGEPGTQLT MRTFHTGGVA GDDITQGLPR
IEELFEARKP KGLAVISEID GRITVKTEHN KRKVIVTPEK GEQKSYNIPY GARLKVKDGD
EINAGDEITE GSINPHDLLK IKGVRGVQLY ILQEVQKVYR MQGVDISDKH IEIIIRQMLK
KVRIEEAGDT ELLPGSYVDF FDFEKVNERI KEEGGEPAKA KSLLLGITKA SLATDSFLSA
ASFQETTRVL TEAAIKGKVD PLIGLKENVI IGKLVPAGTG MPHYRNIDLA YNDEENEAQS
DKSQDEQEIG EITVDMGE
|
|---|
| |