Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_06185 |
Symbol | fliF |
ID | 6306285 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 2838918 |
End bp | 2840642 |
Gene Length | 1725 bp |
Protein Length | 574 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642640046 |
Product | flagellar MS-ring protein |
Protein accession | YP_001913905 |
Protein GI | 188576976 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.000901294 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCACTTG CGATCAGCAA AGAAAACATG AACCAGAACG CCGAAAAGGC GGGGCAATGG TTCGACCGTG TCAGCAGCCT GCAGATCACC CGCAAGCTGA CCATGATGGC GATGATCGCC CTGGCGGTGG CGGCCGGCCT GGCGGTGTTC TTCTGGTCGC AGAAGCCCGG CTATCAGTCG CTGTACACCG GCCTGGATGA AAAGGGCAAT GCCGAAGCGG CCGACCTGCT GCGCACCGCG CAGATCCCCT ACAAGATCGA TCAGGGTACC GGCGCCATTT CGGTGCCGCA GGACCGTCTG TACGACGCCC GCCTGAAGCT GGCCGGCTCC GGCCTCACCG GCAAGGAAAC CGGCGGCGGT TTCGAACTGA TGGAAAAGGA CCCGGGCTTC GGCGTCAGCC AGTTCGTGGA AAACGCCCGT TACCAGCACG CGCTGGAAAC CGAACTTTCG CGCACCATCG GCACGCTGCG CCCGGTGCGC GAAGCCCGCG TGCACCTGGC CATTCCCAAA CCCAGCGCCT TCACCCGCCA GCGTGATGTG GCCAGCGCCT CGGTGGTGCT GGAACTGCGC GGTGGCCAGG GTCTGGAACG CAACCAGGTC GATGCCATCG TCAATCTGGT GGCGTCCAGC ATCCCGAACA TCACCCCCGA GCGCGTCACC GTGGTCGATC AGAGTGGCCG CATGCTCTCC ATCGCCGACC CCAATAGCGA TGCCGCCCAG CACGCTGCCC AGTTCGAACA GGTGCGCCGC CAGGAAAGCT CCTACAACCA GCGCATCCGC GAATTGCTGG AACCGATGAC CGGCCCAGGC CGGGTCAACC CGGAAACCAG CGTGGACATG GACTTTTCGG TGGTCGAAGA AGCCCGCGAG CTCTACAACG GTGAGCCGGC CAAGCTACGC AGCGAGCAGG TCAACGACAC CAGCACCACG GCGACCGGCC CGCAGGGCCC TCCGGGCGCC ACCAGCAACA GCCCCGGCCA GCCGCCGGCA CCGGCCGCTG CAGGCGCACC GGGCACCCCC GCTGCTGCCA ACGGCCAGGC CACCGCAGCG GCCGCGCCGA CCGAAAGTTC CAAGAGCGCC ACCCGTAACT ACGAATTGGA CCGAACCTTG CAGCACACCC GCCAGCCGGC CGGCCGCATC AAGCGCGTCT CGGTGGCGGT GCTGCTGGAC AACGTCCCGC GCCCCGGCGC CAAGGGCAAG ATGGTCGAAC AACCGCTCAC CGCTGCCGAG CTCACCCGTA TCGAAGGCCT GGTCAAGCAG GCAGTGGGCT TTGATGCGGC ACGCGGCGAC ACGGTGTCGG TGATGAATGC GCCGTTCGTG CGTGAAGCGG TGGCCGGCGA AGAAGGGCCG AAGTGGTGGG AAGACCCGCG CGTGCAGAAC GGTCTGCGCT TGCTGGTCGG TGCGCTGGTG GTGCTGGCGC TGCTGTTCGG TGTGGTGCGC CCCACCCTGC GTCAGCTCAC CGGCGTGACC CCCATCAAGG AAAAGCAGCG CAAGGGCGGC AACGATGGCA CTCCACAGAG CGCCGACGTG CGGATGGTCG ATGACGAGGA TTCGCTGCTG CCGCACATGG GCGAGGACAC CGCCAGCATC GGGCAGGAGC GCAAACCGGC AATCGCCCTG CCGGATGCCT ACGAAGAACG CATGCGTGTT GCACGCGAAG CAGTCAAAGC CGATTCAAAA CGTGTTGCAC AAGTCGTAAA GGGATGGGTT GCCAGTGAAG CCTGA
|
Protein sequence | MALAISKENM NQNAEKAGQW FDRVSSLQIT RKLTMMAMIA LAVAAGLAVF FWSQKPGYQS LYTGLDEKGN AEAADLLRTA QIPYKIDQGT GAISVPQDRL YDARLKLAGS GLTGKETGGG FELMEKDPGF GVSQFVENAR YQHALETELS RTIGTLRPVR EARVHLAIPK PSAFTRQRDV ASASVVLELR GGQGLERNQV DAIVNLVASS IPNITPERVT VVDQSGRMLS IADPNSDAAQ HAAQFEQVRR QESSYNQRIR ELLEPMTGPG RVNPETSVDM DFSVVEEARE LYNGEPAKLR SEQVNDTSTT ATGPQGPPGA TSNSPGQPPA PAAAGAPGTP AAANGQATAA AAPTESSKSA TRNYELDRTL QHTRQPAGRI KRVSVAVLLD NVPRPGAKGK MVEQPLTAAE LTRIEGLVKQ AVGFDAARGD TVSVMNAPFV REAVAGEEGP KWWEDPRVQN GLRLLVGALV VLALLFGVVR PTLRQLTGVT PIKEKQRKGG NDGTPQSADV RMVDDEDSLL PHMGEDTASI GQERKPAIAL PDAYEERMRV AREAVKADSK RVAQVVKGWV ASEA
|
| |