| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_06145 |
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| Symbol | |
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| ID | 6306245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 2794791 |
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| End bp | 2797553 |
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| Gene Length | 2763 bp |
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| Protein Length | 920 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642640006 |
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| Product | Putative signal protein with PAS(PAC), GGDEF and EAL domains |
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| Protein accession | YP_001913865 |
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| Protein GI | 188576936 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0228154 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGCAGC ACCCGCTGAC CTCGGCGGTG GTGTTGTTGG ATGCGCATGG CCAGCCCCTG
GCGGCCAACC GCGTTGCGCA ATCCCTCGGA TTGCCGGCAA CCCTGGGTGC GTATGCCGAA
GTATTGGAAA GTAGCCGCGC CCAGCTGGCC GACAACGGTG GCATGGCGCC CTGCGTATTG
CCGGGGACCG GCGGCGGTCG GCTGGAAGGC TGGCTGCGTG CGGTCTGCGA CGAACATGGT
CAGGTCATGG CGTTCACCTT GAGCATTCCC GAGCCGAAGG GTGCCGATGG CACCAGTCGC
TGGGAAATGG GCTTGGACAG CGCCGATCAC GGCTTGTGGG ACTGGGATAT TCCGGCCGAT
GTGGTGTATC GCTCCGAGCG CTGGACGCGC ATGCTTGGTT ATTCCGAGCA GCCGCCGCCG
AACAATCTCA CCGCTTTGTC CGGGCTGATG CATCCGGAAG ACCATGCGCA TGTCAGCGCG
GCGGTGCAGG CGCATCTGGA AGGGCGCACC GACACCTACG TGGCCGAATT CCGGCTGCGC
CAGCACGACG GCCAGTGGCG CTGGATCCTG GATCGCGGCC GCGTGGTATC GCGCACCGCC
GACGGACGCC CGCTGCGCAT GGTCGGCACG CACACCGACG TGCACCATCA TAAATTGCTT
GAGCAGCAGC TGCGCGAGCA GCAGGCCCAG CTCGAAGAAG CCCAACGCAT TGCCAGTATG
GGCAGCTGGA GCTGGGATTC GCATCAAGAT GCGCTGTGGG TGTCGCAGGA TTTCCTGCAA
CAACTCGGCA TGATCCACCT GCGTTTGCAA GGTATTCGCG GCATCCTGCG TTTGCTCTGT
CGCCCCTCGG TTGCGCAGCT GCGCAGCGCC TGGCGCAAGA TCAAGCACGA AGGCATGCCG
GTGCATTTCG AACTGGAAAT CAACGGTCTG CCCGGCGCTA ATCCGCATCA TCTGCGGGTC
TGGGCGCAGC CGGTGTTCGA CGGCGACGGC AGCATGGTGC GCGTCCTTGG CCAGCTGCAG
AACGTCACCG AGCAACGCCA GACCGACGCC TTGATTCGCT GGCGCACCGA ACTGCTCAAT
CGCGTGTCTG CGCTTGGCAA GATCGGCGGC TGCGAGATCG AGGTCGACAC CCGGCGCATG
CAGTGGACCG AGGAGTGCTA CCGCATCCAT GGCCTGCGCA AGGAAAACAT CACCCTGGAG
CAGGCGCTGT CGCTGTACAC CCAGGATTCG CGCGACGCCT TCGAAGCGGC GCTGCTGCGC
ATTTCCGACG GCGGCCTGCC CGAGCAGCTG GAGCTGTGTT TCTATCGCAA CTCCGGCCAG
CTCATCTGGG TGCAGGTGCT GATCGAGCTG GACCGTCGCG AGGGCTTGCC GCCGCGGTTT
GTGGCGTTGT TCCGCGATGT TACCCGCGAA CGCGAAGCCA ACGAACGGAT CGAGCTGCTC
GCGCATTACG ACCGCCTGAC CGGCTTGCCG AACCGCTTCT TGCTGCGCGA ACAGGCAGAA
AACGCCATTC GCGAGGCGCA CGAGCGCGGC CAGGTATTGG CGATGCTGCT GATTGATCTG
GATGGCTTCA AAAGCGTCAA CGATTCGTTT GGCTACGCCA CCGGCGACAA CCTGCTCAAG
CTTGCCTCGT CGCGCCTGCA TCAACATTTG CGCAATAGCG ACCTGTTCGG CCGCTTCAGC
GACGACGAAT TCATCGTGCT GTTGCGCGAT ATGTCCGAGC CGGAAGACGC CGGCCATGTG
GCGCGCAAGC TGATTGCTGC GCTCGGTGAG CCGCTGCGCA AGGAACACGT CACCCTCAAG
CTCGGCGCCA GCATCGGCAT CGCGCTGCAG GGTGAAGGCC TGTCGGATTT CGACAGCCTG
CTGCGCGCCG CCGATGCGGC GATGCACGCA GCCAAGGAGA CCGGCCGCAA CACCTTCCAT
TACTACAGCC AGGACGTGTT GCTGCGTGCG CAGCGTCGCC TGGAACTGGG GCACGCGCTG
CAGGGTGCGC TCGAGCGCGA AGAATTCACG CTGGTCTACC AGCCGCTGGT CAACACCTCA
GGCGACGCGT CGCCGGCGAT CGAAGCGTTG ATGCGCTGGA ATCGCCCCGG ACATGGTCCG
TGCAGCCCGG TCGAATTCAT TCCGATCGCC GAGGAATGCG GAGAAATCGT GCGCCTGGGC
GAATGGGTGA TCGGCGAGGC CTGCCGCCAG GCGGTAGTCT GGGATCGCGC CGGCCTGCAT
TTCAGCCGCG TCTCGGTGAA GGTGTCTGCG GTGCAATTGC GCGAGCGTGG TTTTGCCGAG
CGCGTGCTGG AAATCTGCCG CGATAACGGA TGGCCGCCTT CACGCCTCGA ACTCGAACTG
ACCGAATCTG CCTTGATTCG CGACTCCGAT TCGCTGCGCC GCTGCTTCGA ACTGTTCGAA
CAGAACGGCG TGTTGCTGGC GGTGGACGAC TTCGGCACCG GCTTCTCCAA TCTGCATTAC
CTCAACCGCT TCCCGGTGCA GCGTCTGAAG ATCGACCGCA GCTTCGTGCA AGGCATGCTC
GACGATGCCA ACACGGCCGA AGTCACCCAG GCCATCGTGC ATCTGGGCCA TGCCCTGGGC
ATGCAGGTGG TCGCCGAAGG CGTGGAAACC GTGCAGGAAG ATGCACTGCT GCGTCAGCAG
GGTTGCGACG AAATCCAGGG TTATTTCTAT TCACGCCCGC TGTCGCCGCG CGACATGGCG
CAGTGGCTGC GCGAGGCCGA AACCGGCATG CGGCTGGGGG CACGGCTGGT GATTGCCAGC
TGA
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| Protein sequence | MLQHPLTSAV VLLDAHGQPL AANRVAQSLG LPATLGAYAE VLESSRAQLA DNGGMAPCVL
PGTGGGRLEG WLRAVCDEHG QVMAFTLSIP EPKGADGTSR WEMGLDSADH GLWDWDIPAD
VVYRSERWTR MLGYSEQPPP NNLTALSGLM HPEDHAHVSA AVQAHLEGRT DTYVAEFRLR
QHDGQWRWIL DRGRVVSRTA DGRPLRMVGT HTDVHHHKLL EQQLREQQAQ LEEAQRIASM
GSWSWDSHQD ALWVSQDFLQ QLGMIHLRLQ GIRGILRLLC RPSVAQLRSA WRKIKHEGMP
VHFELEINGL PGANPHHLRV WAQPVFDGDG SMVRVLGQLQ NVTEQRQTDA LIRWRTELLN
RVSALGKIGG CEIEVDTRRM QWTEECYRIH GLRKENITLE QALSLYTQDS RDAFEAALLR
ISDGGLPEQL ELCFYRNSGQ LIWVQVLIEL DRREGLPPRF VALFRDVTRE REANERIELL
AHYDRLTGLP NRFLLREQAE NAIREAHERG QVLAMLLIDL DGFKSVNDSF GYATGDNLLK
LASSRLHQHL RNSDLFGRFS DDEFIVLLRD MSEPEDAGHV ARKLIAALGE PLRKEHVTLK
LGASIGIALQ GEGLSDFDSL LRAADAAMHA AKETGRNTFH YYSQDVLLRA QRRLELGHAL
QGALEREEFT LVYQPLVNTS GDASPAIEAL MRWNRPGHGP CSPVEFIPIA EECGEIVRLG
EWVIGEACRQ AVVWDRAGLH FSRVSVKVSA VQLRERGFAE RVLEICRDNG WPPSRLELEL
TESALIRDSD SLRRCFELFE QNGVLLAVDD FGTGFSNLHY LNRFPVQRLK IDRSFVQGML
DDANTAEVTQ AIVHLGHALG MQVVAEGVET VQEDALLRQQ GCDEIQGYFY SRPLSPRDMA
QWLREAETGM RLGARLVIAS
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