Gene PXO_06067 details

Gene Information

• Locus tag: PXO_06067
• Symbol: ccmF
• ID: 6306172
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 2721086
• End bp: 2723023
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 642639934
• Product: cytochrome c-type biogenesis protein CcmF
• Protein accession: YP_001913793
• Protein GI: 188576864
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1138] Cytochrome c biogenesis factor
• TIGRFAM ID: [TIGR00353] c-type cytochrome biogenesis protein CcmF

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.0195051
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTCCTG AGCTCGGGAC GTTCCTACTG GTACTGGCCC TGCTGGTGGC ACTGGTGCAA 
GCCGTGGTGC CGCTGGCCGG CGCGCAGCGT GGGCGCAGCA GCTGGATGGC CGTGGCGCGA 
CCGGCGGCCA TGGTGCAGCT GGCGTTGATC GCGTCGGCCT TTGCCGTGTT GACGCACGCC 
TTCCTGGTGC AGGATTTTTC GGTGCGTTAC GTGGCCGAAA ATTCCAACAG CCTGCTGCCG 
ATGATGTATC GCTATTCGGC GGTGTGGGGC GCGCACGAAG GCTCGCTGCT GCTGTGGACG 
CTGGTGCTGG CGTTGTGGAC GGGCGCGGTA GCGATCTGGT CGCGGCAGCT ACCCGCGCAT 
GTGATCGCCC GCGTGCTCGG CGTCATGGCG CTGGTGAGCA TTGGATTTCT GGCGTTTTTG 
CTGTTCACCT CCAACCCGTT TGCGCGGCTG TTTCCGGTGC CGCTGGAAGG TGGCGACCTC 
AATCCGCTAC TGCAGGATCC GGGGCTAATC GTCCATCCGC CGATGCTGTA TTGCGGCTAC 
GTCGGCTTTG CGGTGCCGTT CGCGTTCGCC ATCGCCGCAC TGCTGGAAGG CCGCATGGAT 
GCGCGCTGGC TACGCTGGAC GCGGCCGTGG ACCAACGTCG CCTGGTCGAT GCTCACGGTT 
GGCATCGCGC TGGGTAGCTG GTGGGCGTAT TACGAGCTGG GCTGGGGTGG CTGGTGGTTC 
TGGGACCCGG TGGAGAACGC CAGTTTCATG CCGTGGCTGG TGGGCACCGC GCTGCTGCAT 
TCGCAGGCGG TGACCGAAAA GCGCGGCAGC TTCGCAAGCT GGACCTTGTT ACTGGCAATC 
GCCGCCTTCG CGCTCTCGCT GCTGGGCACC TTCCTGGTGC GCTCGGGCGT GCTGACCAGC 
GTGCATTCGT TCGCCGCAGA CCCATCGCGC GGACTGTTCA TTCTGGTGTT CTTGTTACTC 
GTGGTCGGTG GTTCGCTGGT GCTGTATGCG CTGCGCGCGC CGCGGTTGTC GCTGGTGGAT 
GATCCGCGCC GCGCGTTTGC CGGCAGCTCG CGCGAAACCC TGTTGCTGTT GAACAACCTG 
TTGCTCACCT GCGCCTGCGC AATGGTGTTG CTGGGTACCT TGTATCCGCT GCTGGCCGAT 
GCATTGGGGC TGGGCAAGTT GTCGGTCGGC CCGCCCTATT TCGGCACCTT GTTCGTGGTG 
TTGATGGCGC CGCTGGTGGC GCTGGTGCCG TTCGGCCCGC TCACCCGCTG GCAACGCGAA 
CAGGCCTCGC GGCCGTTGGC GATGCTCGCA CCGTGGGCAG GCCTGGCGTT GGCGGCCGGT 
GTGCTGGCCT GGTTCGCCGC GCCGCAGGGG CAGTTGAAAG CCGCCGTCGG TGTTGCCGGC 
GCGGCCTGGG TGCTGCTGGG CACAGCGCGG TTCTTGTGGA CGCGGCGCGC GGCCAAGGGG 
CGCAAATTCA CTCCTGAAAT GCTGGGCATG GTGCTGGCGC ATCTGGGCGT TGCGGTGTTC 
CTGTCCGGCG CCTTGCTGGT GGAAGGGTTG AGCCTGCAGC GCGAGGTGGC GTTGGCGCCC 
GGGCAACAGG TGCAGATCGG CCGTTATGCG CTGCATTTCG ATGGGCTGGA AGAACTGCGC 
GGTCCCAATT ACGTGTCCGA CCGTGCCAAC CTGCAGGTGC TCAAGGACGA TGCGCCGGTG 
GGCGTGGTGC ATGCAGAAAA ACGCCGCTAT GCCAGCGGCG GGCAGACCTT GACCGAGGCG 
GCCATCCGCC CCGGTCCGTT TGGCGACCTG TATGTCGCCC TTGGCGAACC GCTGGGCAAT 
CAGGCCTGGG CGGTGCGCGT CCACCTCAAA CCGTTCGTCC GCTGGATCTG GCTGGGGGCG 
CTGCTGATGG CGCTCGGCGG CCTGGTGACC GCGGCCGACC GGCGTTTTCG TCGTTCTCCG 
GAGATCCAAG ATGGTTGA 

 

Protein sequence

MLPELGTFLL VLALLVALVQ AVVPLAGAQR GRSSWMAVAR PAAMVQLALI ASAFAVLTHA 
FLVQDFSVRY VAENSNSLLP MMYRYSAVWG AHEGSLLLWT LVLALWTGAV AIWSRQLPAH 
VIARVLGVMA LVSIGFLAFL LFTSNPFARL FPVPLEGGDL NPLLQDPGLI VHPPMLYCGY 
VGFAVPFAFA IAALLEGRMD ARWLRWTRPW TNVAWSMLTV GIALGSWWAY YELGWGGWWF 
WDPVENASFM PWLVGTALLH SQAVTEKRGS FASWTLLLAI AAFALSLLGT FLVRSGVLTS 
VHSFAADPSR GLFILVFLLL VVGGSLVLYA LRAPRLSLVD DPRRAFAGSS RETLLLLNNL 
LLTCACAMVL LGTLYPLLAD ALGLGKLSVG PPYFGTLFVV LMAPLVALVP FGPLTRWQRE 
QASRPLAMLA PWAGLALAAG VLAWFAAPQG QLKAAVGVAG AAWVLLGTAR FLWTRRAAKG 
RKFTPEMLGM VLAHLGVAVF LSGALLVEGL SLQREVALAP GQQVQIGRYA LHFDGLEELR 
GPNYVSDRAN LQVLKDDAPV GVVHAEKRRY ASGGQTLTEA AIRPGPFGDL YVALGEPLGN 
QAWAVRVHLK PFVRWIWLGA LLMALGGLVT AADRRFRRSP EIQDG