Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_05718 |
Symbol | avrXa27 |
ID | 6307511 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 4112038 |
End bp | 4114644 |
Gene Length | 2607 bp |
Protein Length | 868 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642641249 |
Product | TAL effector AvrBs3/PthA |
Protein accession | YP_001915097 |
Protein GI | 188578168 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.000318376 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACCGCAG TGGAGGCAGT GCATGCATCG CGCAATGCAC TGACGGGTGC CCCCCTGAAC CTGACCCCGG ACCAAGTGGT GGCCATCGCC AGCAATATTG GCGGCAACCA GGCGCTGGAG ACGGTGCAGC GGCTGTTGCC GGTGCTGTGC CAGGACCATG GCCTGACCCC GGACCAAGTG GTGGCCATCG CCAACAATAA CGGCGGCAAG CAGGCGCTGG AGACGGTGCA GCGGCTGTTG CCGGTGCTGT GCCAGGCCCA TGGCCTGACC CCGGACCAAG TGGTGGCCAT CGCCAGCAAT GGCGGCAAGC AGGCGCTGGA GACGGTGCAG CGGCTGTTGC CGGTGCTGTG CCAGGCCCAT GGCCTGACCC CGAACCAGGT CGTGGCCATC GCCAGCAATG GCGGCGGCAA GCAGGCGCTG GAGACGGTGC AGCGGCTGTT GCCGGTGCTG TGCCAGGCCC ATGGCCTGAC CCAGGACCAG GTGGTGGCCA TCGCCAGCAA TAGTGGCGGC AAGCAGGCGC TGGAGACGGT GCAGCGGCTG TTGCCGGTGC TGTGCCAGGC CCATGGCCTG ACCCCGGCCC AAGTGGTGGC CATCGCCAGC AATAACGGCG GCAAGCAGGC GCTGGAGACG GTGCAGCGGC TGTTTCCGGT GCTGTGCCAG GACCATGGCC TGACCCCGGA CCAGGTGGTG ACCATCGCCA ACAATAACGG CGGCAAGCAG GCGCTGGAGA CGGTGCAGCG GCTGTTGCCG GTGCTGTGCC AGGCCCATGG CTTGATCCCG GACCAGGTGG TGGCCATCGC CAACAATAAC GGCGGCAAGC AGGCGCTGGA GACGGTGCAG CGGCTGTTGC CGGTGCTGTG CCAGGCCCAT GGCCTGACCC CGGCCCAAGT GGTGGCCATC GCCAGCAATA TTGGCGGCAA GCAGGCGCTG GAGACGGTGC AGCGGCTGTT GCCGGTGCTG TGCCGGGCCC ATGGCCTGAC CCCGGCCCAA GTGGTGGCCA TCGCCAACAA TAACGGCGGC AAGCAGGCGC TGGAGACGGT GCAGCGGCTG TTGCCGGTGC TGTGCCAGGC CCATGGCCTG ACCCCGGATC AAGTGGTGGC CATCGCCAGC AATATTGGCG GCAAGCAGGC GCTGGAGACG GTGCAGCGCC TGTTGCCGGT GCTGTGCCAG GACCATGGCC TGACCCCGGA CCAGGTCGTG GCCATCGCCA GCAATGGCGG CAAGCAGGCG CTGGAGACGG TGCAGCGGCT GTTGCCGGTG CTGTGCCAGG ACCATGGCCT GACCCCGGCC CAGGTGGTGG CCATCGCCAG CCACGATGGC GGCAAGCAGG CGCTGGAGAC GGTGCAGCGG CTGTTGCCGG TGCTGTGCCA GGACCATGGC CTGACCCTGG ACCAGGTCGT GGCCATCGCC AGCCACGATG GCGGCAAGCA GGCGCTGGAG ACGGTGCAGC GGCTGTTGCC GGTGCTGTGC CAGGACCATG GCCTGACCCT GGACCAGGTG GTGGCCATCG CCAGCAATAT TGGCGGCAAG CAGGCGCTGG AGACGGTGCA GCGGCTGTTG CCGGTGCTGT GCCAGGACCA TGGCCTGACC CCGGACCAGG TCGTGGCCAT CGCCAGCAAT GGCGGCGGCA AGCAGGCGCT GGAGACGGTG CAACGGCTGT TGCCGGTGCT GTGCCAGGAC CATGGCCTGA CCCCGGACCA GGTCGTGGCC ATCGCCAGCA ATGGCGGCGG CAAGCAGGCG CTGGAGAGCA TTGTTGCCCA GTTATCTCGC CCTGATCCGG CGTTGGCCGC GTTGACCAAC GACCACCTCG TCGCCTTGGC CTGCCTCGGC GGACGTCCTG CCCTGGATGC AGTGAAAAAG GGATTGCCGC ACGCGCCGGA ATTGATCAGA AGAATCAATC GCCGTATTCC CGAACGCACG TCCCATCGCG TTGCCGACCT CGCGCACGTG GTGCGCGTGC TTGGTTTTTT CCAGAGCCAC TCCCACCCAG CGCAAGCATT CGATGACGCC ATGACGCAGT TCGGGATGAG CAGGCACGGG TTGGTACAGC TCTTTCGCAG AGTGGGCGTC ACCGAATTCG AAGCCCGCTG CGGAACGCTC CCCCCAGCCT CGCAGCGTTG GGACCGTATC CTCCAGGCAT CAGGGATGAA AAGGGCCAAA CCGTCCCCTA CTTCAGCTCA AACGCCGGAT CAGGCGTCTT TGCATGCATT CGCCGATTCG CTGGAGCGTG ACCTTGATGC GCCCAGCCCA ATGCACGAGG GAGATCAGAC GCGGGCAAGC AGCCGTAAAC GGTCCCGATC GGATCGTGCT GTCACCGGCC CCTCCACACA GCAATCTTTC GAGGTGCGCG TTCCCGAACA GCGCGATGCG CTGCATTTGC CCCTCAGCTG GAGGGTAAAA CGCCCGCGTA CCAGGATCGG GGGCGGCCTC CCGGATCCTG GTACGCCCAT CGCTGCCGAC CTGGCAGCGT CCAGCACCGT GATGTGGGAA CAAGATGCGG CCCCCTTCGC AGGGGCAGCG GATGATTTCC CGGCATTCAA CGAAGAGGAG CTCGCATGGT TGATGGAGCT ATTGCCTCAG TCAGGCTCAG TCGGAGGGAC GATCTGA
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Protein sequence | MTAVEAVHAS RNALTGAPLN LTPDQVVAIA SNIGGNQALE TVQRLLPVLC QDHGLTPDQV VAIANNNGGK QALETVQRLL PVLCQAHGLT PDQVVAIASN GGKQALETVQ RLLPVLCQAH GLTPNQVVAI ASNGGGKQAL ETVQRLLPVL CQAHGLTQDQ VVAIASNSGG KQALETVQRL LPVLCQAHGL TPAQVVAIAS NNGGKQALET VQRLFPVLCQ DHGLTPDQVV TIANNNGGKQ ALETVQRLLP VLCQAHGLIP DQVVAIANNN GGKQALETVQ RLLPVLCQAH GLTPAQVVAI ASNIGGKQAL ETVQRLLPVL CRAHGLTPAQ VVAIANNNGG KQALETVQRL LPVLCQAHGL TPDQVVAIAS NIGGKQALET VQRLLPVLCQ DHGLTPDQVV AIASNGGKQA LETVQRLLPV LCQDHGLTPA QVVAIASHDG GKQALETVQR LLPVLCQDHG LTLDQVVAIA SHDGGKQALE TVQRLLPVLC QDHGLTLDQV VAIASNIGGK QALETVQRLL PVLCQDHGLT PDQVVAIASN GGGKQALETV QRLLPVLCQD HGLTPDQVVA IASNGGGKQA LESIVAQLSR PDPALAALTN DHLVALACLG GRPALDAVKK GLPHAPELIR RINRRIPERT SHRVADLAHV VRVLGFFQSH SHPAQAFDDA MTQFGMSRHG LVQLFRRVGV TEFEARCGTL PPASQRWDRI LQASGMKRAK PSPTSAQTPD QASLHAFADS LERDLDAPSP MHEGDQTRAS SRKRSRSDRA VTGPSTQQSF EVRVPEQRDA LHLPLSWRVK RPRTRIGGGL PDPGTPIAAD LAASSTVMWE QDAAPFAGAA DDFPAFNEEE LAWLMELLPQ SGSVGGTI
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