| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_05714 |
|---|
| Symbol | talC9b |
|---|
| ID | 6307507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 4105793 |
|---|
| End bp | 4110244 |
|---|
| Gene Length | 4452 bp |
|---|
| Protein Length | 1483 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642641245 |
|---|
| Product | TAL effector AvrBs3/PthA |
|---|
| Protein accession | YP_001915093 |
|---|
| Protein GI | 188578164 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0599163 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCCCA TTCGTTCGCG CACGCCAAGT CCTGCACGCG AGCTTCTGCC CGGACCCCAA
CCGGATAGGG TTCAGCCGAC TGCAGATCGG GGGGGGGCTC CGCCTGCTGG CGGCCCCCTG
GATGGCTTGC CCGCTCGGCG GACGATGTCC CGGACCCGGC TGCCATCTCC CCCTGCGCCC
TCGCCTGCGT TCTCGGCGGG CAGCTTCAGC GATCTGCTCC GTCAGTTCGA TCCGTCGCTT
CTTGATACAT CGCTTCTTGA TTCGATGCCT GCCGTCGGCA CGCCGCATAC AGCGGCTGCC
CCAGCAGAGT GGGATGAGGT GCAATCGGGT CTGCGTGCAG CCGATGACCC GCCACCCACC
GTGCGTGTCG CTGTCACTGC CGCGCGGCCG CCGCGCGCCA AGCCGGCCCC GCGACGGCGT
GCGGCGCAAC CCTCCGACGC TTCGCCGGCC GCGCAGGTGG ATCTACGCAC GCTCGGCTAC
AGTCAGCAGC AGCAAGAGAA GATCAAACCG AAGGTGCGTT CGACAGTGGC GCAGCACCAC
GAGGCACTGG TGGGCCATGG GTTTACACAC GCGCACATCG TTGCGCTCAG CCAACACCCG
GCAGCGTTAG GGACCGTTGC TGTCACGTAT CAGGACATAA TCACGGCGTT GCCAGAGGCG
ACACACGAAG ACATCGTTGG CGTCGGCAAA CAGTGGTCCG GCGCACGCGC CCTGGAGGCC
TTGCTCACGA AGGCGGGGGA GTTGAGAGGT CCGCCGTTAC AGTTGGACAC AGGCCAACTT
CTCAAGATTG CAAAACGTGG CGGCGTGACC GCAGTGGAGG CAGTGCATGC ATCGCGCAAT
GCACTGACGG GTGCCCCCCT GAACCTGACC CCGGACCAAG TGGTGGCCAT CGCCAGCCAC
GATGGCGGCA AGCAGGCACT GGAGACGGTG CAGCGGCTGT TGCCGGTGCT GTGCCAGGCC
CATGGCCTGA CCCCGGCCCA GGTCGTGGCC ATCGCCAGCC ACGATGGCGG CAAGCAGGCG
CTGGAGACGG TGCAGCGGCT GTTGCCGGTG CTGTGCCAGG CCCATGGTCT GACCCCGGCG
CAGGTGGTGG CCATCGCCAG CAATAACGGC GGCAAGCAGG CGCTGGAGAC GGTGCAGCGG
CTGTTGCCGG TGCTGTGCCA GGCCCATGGC CTGACCCCGG ACCAGGTGGT GGCCATCGCC
AGCAATAACG GCGGCAAGCA GGCGCTGGAG ACGGTGCAGC GGCTGTTGCC GGTGCTGTGC
CAGGCCCATG GCCTGACCCC AGACCAGGTG GTGGCCATCG CCAGCAATGG CGGCGGCAAG
CAGGCGCTGG AGACGGTGCA GCGGCTGTTG CCGGTGCTGT GCCAGGCCCA TGGCCTGACC
CCGGACCAGG TCGTGGCCAT CGCCAGCAAT GGCGGCGGCA AGCAGGCGCT GGAGACGGTG
CAGCGGCTGT TGCCGGTGCT GTGCCAGGCC CATGGCCTGC CCCCGGCGCA GGTGGTGGCC
ATCGCCAGCC ACGATGGCGG CAAGCAGGCG CTGGAGACGG TGCAGCGGCT GTTGCCGGTG
CTGTGCGAGG CCCATGGCCT GACCCCGGCG CAGGTGGTGG CCATCGCCAG CAATAGTGGC
GGCAAGCAGG CGCTGGAGAC GGTGCAGCGG CTGTTGCCGG TGCTGTGCCA GGCCCATGGA
CTGACCCTGG ACCAGGTGGT GGCCATCGCC AGCCATGGCG GCAGCAAGCA GGCGCTGGAG
ACGGTGCAGC GGCTGTTGCC GGTGCTGTGC CAGGACCATG GCCTGACCCC GGACCAGGTG
GTGGCCATCG CCAGCCACGA TGGCGGCAAG CAGGCGCTGG AGACGGTGCA GCGGCTGTTG
CCGGTGCTGT GCCAGGCCCA TGGCCTGACC CCGGCGCAGG CGGTGGCCAT CGCCAGCAAT
GGCGGCGGCA AGCAGGCGCT GGAGACGGTG CAACGGCTGT TGCCGGTGCT GTGCCAGGAC
CATGGCCTGA CCCCGGACCA GGTGGTGGCC ATCGCCAGCA ATGGCGGCAA GCAGGCGCTG
GAGACGGTGC AGCGGCTGTT GCCGGTGCTG TGCCAGGACC ATGGCCTGAC CCCGGACCAG
GTCGTGGCCA TCGCCAGCCA CGATGGCGGC AAGCAGGCGC TGGCGACGGT GCAGCGGCTG
TTGCCGGTGC TGTGCCAGGA CCATGGCCTG ACCCCGGACC AGGTGGTGGC CATCGCCAGC
CACGATGGCG GCAAGCAGGC GCTGGAGACG GTGCAGCGGC TGTTGCCGGT GCTGTGCCAG
GACCATGGCC TGACCCCGGA CCAGGTGGTG GCCATCGCCA GCCACGATGG CGGCAAGCAG
GCGCTGGAGA CGGTGCAGCG GCTGTTGCCG GTGCTGTGCC AGGACCATGG CCTGACCCCG
GACCAGGTGG TGGCCATCGC CAGCAATGGC GGCAAGCAGG CGCTGGAGAC GGTGCAGCGG
CTGTTGCCGG TGCTGTGCCA GGACCATGGC CTGACCCCGG ACCAGGTGGT GGCCATCGCC
AACAATAACG GCGGCAAGCA GGCGCTGGAG ACGGTGCAGC GGCTGTTGCC GGTGCTGTGC
CAGGACCATG GCCTGACCCC GGACCAGGTC GTGGCCATCG CCAGTAATCA GGTGGTGGCC
ATCGCCAGTA ATATTGGCGG CAAGCAGGCG CTGGAGACGG TGCAGCGGCT GTTGCCGGTG
CTGTGCCAGG ACCATGGCCT GACCCCGGAC CAGGTCGTGG CCATCGCCAG CAATAACGGC
GGCAAGCAGG CGCTGGAGAC GGTGCAGCGG CTGTTGCCGG TGCTGTGCCA GGACCATGGC
CTGACCCCGG ACCAGGTCGT GGCCATCGCC AGCCACGATG GCGGCAAGCA GGCGCTGGAG
ACGGTGCAGC GGCTGTTGCC GGTGCTGTGC CAGGACCATG GCCTGACCCC GGCGCAGGTG
GTGGCCATCG CCAGCCATAT TGGCGGCAAG CAGGCGCTGG AGACGGTGCA GCGGCTGTTG
CCGGTGCTGT GCCAGGACCA TGGCCTGACC CTGGACCAGG TGGTGGCCAT TGCCAGCAAT
GACGGCAGCA AGCAGGCGCT GGAGACGGTG CAGCGGCTGT TGCCGGTGCT GTGCCAAGAC
CATGGCCTGA CCCCGGACCA GGTCGTGGCC ATCGCCAGCC ACGATGGCGG CAAGCAGGCG
CTGGAGACGG TGCAGCGGCT GTTGCCGGTG CTGTGCCAGG ACCATGGCCT GACCCCGGAC
CAGGTCGTGG CCATCGCCAG CCATGGCGGC GGCAAGCAGG CGCTGGAGAC GGTGCAACGG
CTGTTGCCGG TGCTGTGCCA GGACCATGGC CTGACCTCGG CCCAGGTCGT GGCCATCGCC
AACAATAACG GCGGCAAGCA GGCGCTGGAG ACGGTGCAGC GGCTGTTGCC GGTGCTGTGC
CAGGACCATG GCCTGACCCC GGACCAGGTC GTGGCCATCG CCAGCCATGG CGGCGGCAAG
CAGGCGCTGG AGACGGTGCA GCGGCTGTTG CCGGTGCTGT GCCAGGACCA TGGCCTGACC
CCGGACCAGG TCGTGGCCAT CGCCAGCAAT GGCGGCAAGC AGGCGCTGGA GAGCATTGTT
GCCCAGTTAT CTCGCCCTGA TCCGGCGTTG GCCGCGTTGA CCAACGACCA CCTCGTCGCC
TTGGCCTGCC TCGGCGGACG TCCTGCCCTG GATGCAGTGA AAAAGGGATT GCCGCACGCG
CCGGAATTGA TCAGAAGAAT CAATCGCCGC ATTCCCGAAC GCACGTCCCA TCACGTTCCC
GACCTCGCGC ACGTGGTGCG CGTGCTTGGT TTTTTCCAGA GCCACTCCCA CCCAGCGCAA
GCATTCGATG ACGCCATGAC GCAGTTCGGG ATGAGCAGGA ACGGGTTGGT ACAGCTCTTT
CGCAGAGTGG GCGTCACCGA ACTCGAAGCC CGCGGTGGAA CGCTCCCCCC AGCCTCGCAG
CGTTGGGACC GTATCCTCCA GGCATCAGGG ATGAAAAGGG CCAAACCGTC CCCTACTTCA
GCTCAAACAC CGGATCAGGC GTCTTTGCAT GCATTCGCCG ATTCGCTGGA GCGTGACCTT
GATGCGCCTA GCCCAATGCA CGAGGGAGAT CAGACAGGGG CAAGCAGCCG TAAACGGTCC
CGATCGGATC GTGCTGTCAC CGGCCCCTCC GCACAGCAAT CTTTCGAGGT GCGCGTTCCC
GAACAGCGCG ATGCGCTGCA TTTGCCCCTC AGCTGGAGGG TAAAACGCCC GCGTACCAGG
ATCGGGGGCG GCCTCCCGGA TCCTGGTACG CCCATCGCTG CCGACCTGGC AGCGTCCAGC
ACCGTGCTGT GGGAACAAGA TGCGGCCCCC TTCGCAGGGG CAGCGGATGA TTTCCCGGCA
TTCAACGAAG AGGAGCTCGC ATGGTTGATG GAGCTATTGC CTCAGTCAGG CTCAGTCGGA
GGGACGATCT GA
|
|---|
| Protein sequence | MDPIRSRTPS PARELLPGPQ PDRVQPTADR GGAPPAGGPL DGLPARRTMS RTRLPSPPAP
SPAFSAGSFS DLLRQFDPSL LDTSLLDSMP AVGTPHTAAA PAEWDEVQSG LRAADDPPPT
VRVAVTAARP PRAKPAPRRR AAQPSDASPA AQVDLRTLGY SQQQQEKIKP KVRSTVAQHH
EALVGHGFTH AHIVALSQHP AALGTVAVTY QDIITALPEA THEDIVGVGK QWSGARALEA
LLTKAGELRG PPLQLDTGQL LKIAKRGGVT AVEAVHASRN ALTGAPLNLT PDQVVAIASH
DGGKQALETV QRLLPVLCQA HGLTPAQVVA IASHDGGKQA LETVQRLLPV LCQAHGLTPA
QVVAIASNNG GKQALETVQR LLPVLCQAHG LTPDQVVAIA SNNGGKQALE TVQRLLPVLC
QAHGLTPDQV VAIASNGGGK QALETVQRLL PVLCQAHGLT PDQVVAIASN GGGKQALETV
QRLLPVLCQA HGLPPAQVVA IASHDGGKQA LETVQRLLPV LCEAHGLTPA QVVAIASNSG
GKQALETVQR LLPVLCQAHG LTLDQVVAIA SHGGSKQALE TVQRLLPVLC QDHGLTPDQV
VAIASHDGGK QALETVQRLL PVLCQAHGLT PAQAVAIASN GGGKQALETV QRLLPVLCQD
HGLTPDQVVA IASNGGKQAL ETVQRLLPVL CQDHGLTPDQ VVAIASHDGG KQALATVQRL
LPVLCQDHGL TPDQVVAIAS HDGGKQALET VQRLLPVLCQ DHGLTPDQVV AIASHDGGKQ
ALETVQRLLP VLCQDHGLTP DQVVAIASNG GKQALETVQR LLPVLCQDHG LTPDQVVAIA
NNNGGKQALE TVQRLLPVLC QDHGLTPDQV VAIASNQVVA IASNIGGKQA LETVQRLLPV
LCQDHGLTPD QVVAIASNNG GKQALETVQR LLPVLCQDHG LTPDQVVAIA SHDGGKQALE
TVQRLLPVLC QDHGLTPAQV VAIASHIGGK QALETVQRLL PVLCQDHGLT LDQVVAIASN
DGSKQALETV QRLLPVLCQD HGLTPDQVVA IASHDGGKQA LETVQRLLPV LCQDHGLTPD
QVVAIASHGG GKQALETVQR LLPVLCQDHG LTSAQVVAIA NNNGGKQALE TVQRLLPVLC
QDHGLTPDQV VAIASHGGGK QALETVQRLL PVLCQDHGLT PDQVVAIASN GGKQALESIV
AQLSRPDPAL AALTNDHLVA LACLGGRPAL DAVKKGLPHA PELIRRINRR IPERTSHHVP
DLAHVVRVLG FFQSHSHPAQ AFDDAMTQFG MSRNGLVQLF RRVGVTELEA RGGTLPPASQ
RWDRILQASG MKRAKPSPTS AQTPDQASLH AFADSLERDL DAPSPMHEGD QTGASSRKRS
RSDRAVTGPS AQQSFEVRVP EQRDALHLPL SWRVKRPRTR IGGGLPDPGT PIAADLAASS
TVLWEQDAAP FAGAADDFPA FNEEELAWLM ELLPQSGSVG GTI
|
|---|
| |