| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_05648 |
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| Symbol | dnaE |
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| ID | 6306496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 3061331 |
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| End bp | 3064921 |
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| Gene Length | 3591 bp |
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| Protein Length | 1196 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642640250 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_001914107 |
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| Protein GI | 188577178 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0000434171 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCACTT CCCGCTTCGT CCATCTGCAC GTCCACACCG AGTTCTCGCT GGCGGATTCC
ACTATCCGTG TGCCCGAGAA ACCGGATCAG GCTGACCCGA AAAAGGCCAA GCAGGCCAAC
CTGCTGAGCC GGGCCGTCGA AATCGACATG CCCGCGTTGG CGGTCACCGA CCTCAACAAC
CTGTTCGCAC TGGTCAAGTT CTACAAGGCC GCCGAAGGCG TGGGCATCAA GCCGATCGCC
GGCGCCGACG TGATGATCGC CACACCGGAC ATGACGCCCT GGCGCATGAC CCTGCTGTGC
CGCGACCGGG AGGGCTACCT GAGCCTGTCG CGGCTGCTCA CCCGCGCCTG GATGGAAGGC
CACCGCCCGG AAGGCGGCGT GGCGATCCAT CCGGAATGGC TGCAGGCCGG CCACGCCAAC
CTGTTTGCGC TGGCCGGCCG CGACAGCTTG GCCGGGCGTT TGTTCAGCGA AGGCCGCGCC
GACCTGGCCG AGCAACAACT GGCCGACTGG CAGCGCGTGT TCGGCGACGG CCTGCACCTG
GAACTCACCC GCACCGGTCG CGAGTGCGAA GAACGCTTCA ACCAGTTCGC GCTCAACGCA
GCGGGCGTAC GCGGGCTGCC GGTCGTGGCC AGTAATGACG TGCGGTTTTT ATATGCAAGC
GACTTCAACG CACACGAAGC GCGCGTGTGC ATTTCCTCGG GCCGCGTGCT CGACGACCCC
AAGCGCCCGC GCGACTACAG CGACCAGCAG TACCTGAAAT CCAGCGAGGA GATGGCGGCA
TTGTTCGCCG ACATCCCCGA CGCGATCGAC AACACCCACG CGCTGGCGCA ACGCTGCAAC
ATCGAGATGC GCCTGGGCAC CTACTTCCTG CCCGCCTACC CGGTGCCGGA CGACGAGACG
CTGGACAGCT GGATCCGCAG CCAATCGCGC GACGGTCTGG CCGCACGTCT GGAAAAAAGC
CCGATTGCAC CGGGCAAGAC GCGCCAGGAC TACGTGGACC GGCTCGAATT CGAGCTGGAC
ACCATCATCA ACATGGGCTT CCCTGGCTAC TTTCTGATCG TGGCCGACTT CATCCAGTGG
GGCAAGAACC AGGGCATTCC GATCGGCCCA GGGCGTGGCT CCGGTGCCGG CTCGCTGGTG
GCCTGGGCGC TGCAGATCAC CGATCTGGAC CCGCTGCCGT ACAACCTGCT GTTCGAGCGC
TTCTTGAACC CCGAGCGCGT GTCGATGCCC GACTTCGACA TCGACTTCTG CATGGACCGC
CGCGACGAAG TCATCGACTA CGTGGCACGC AAGTACGGCC GCGAGCGCGT CAGCCAGATC
ATCACCTACG GCACCATGGC CGCCAAGGCG GTGGTGCGCG ATGCCGGGCG CGTACTCGGT
TTCACCTATG GTCTGGTCGA CAGCGTCGCC AAGCTGATCC CCAACATCCT GGGCATCACG
CTCAAGGATG CGATGGGCGA AGGCAAGGAT TCGGAGATGG CCTCGCCGGA ACTGATCCAG
CGCTACCAGG TCGAAGACGA CGTGCGCGAC CTGATGGACC TGGCGCGCCA GCTCGAAGAC
CTCACCCGCA ACGCCGGCAA GCACGCCGGC GGCGTGGTGA TCGCGCCCGA GCCGCTGAGC
GAATTCTGCC CGCTGTTCGC CGAACACGAC GAAGACGGCC GCGGCAAGAA TCCGGTCACC
CAGTTCGACA AGGACGACGT CGAAGCGGTG GGCCTGGTGA AGTTCGACTT CCTCGGCCTG
CGCACGCTGA CCATCATCGA TTGGGCGGTC AAGGCGATCA ACGTGCGCCA CGCACGCGCC
GGCATCGACC CGGTCGACAT CACCACCATT CCGCTCGACG ACGTGCCCAC CTACAAGGGC
GTGTTCGCCT TGGGCAACAC CGGCGCGGTG TTCCAGTTCG AATCCTCGGG CATGCGCCGC
CTGCTCAAGG ACGCGCGCCC GGACCGCTTC GAAGACCTGA TCGCGCTGGT GTCGCTGTAC
CGCCCCGGCC CGATGGACCT GATCCCGGAC TTCAACGCGC GCAAGCATGG CCAGCAGGAG
ATCGTCTATC CCGACCCGCG CACCGAAGTC ATCCTGAAAG ACACCTACGG CATCATGGTG
TATCAGGAGC AGGTGATGCA GATGGCGCAG ATCGTCGGCG ATTACTCGCT GGGCGGCGCC
GACCTGTTGC GTCGTGCAAT GGGCAAGAAG GTGCCGGCCG AAATGGCCAA GCACCGCGAA
ATCTTCCGCG AAGGTGCGGC CAAGGGCGGC GTCAGCGCGG CCAAGGCCGA CGAAATCTTC
GACTTGATGG AGAAGTTCGC CGGCTACGGC TTCAACAAGT CGCACGCGGC CGCCTATGCG
CTGGTCAGCT ATCAGACCGC ATGGCTGAAA CGGCATTACC CGGCCGAATT CATGGCCGCG
ACGCTGTCCT CGGACATGGA CAACACCGAC AAGGTGGTCG GCTTTCTCGA TGAGGTACGC
AACCTCGGCC TCACCGTCAA GCCGCCACGC GTCAACGAAT CGGCCTACAT GTTCGAGGCG
GCCAGCCCGG ACACCATTCA ATACGGCCTG GGCGCGATCA AGGGCGTCGG CCAGGGCGCG
TGCGAGGCGA TCGTCGAAGA ACGCCAGCGC GGTGGCCCCT ACACCACGCT GCTGGATTTC
TGCACGCGCG TGGGCACCAC CAAGCTCAAT CGGCGCACGC TGGAAGCGAT GATCAATGCC
GGCGCGATGG ATGGGCTGGG CAAGAACCGC GCTTCGCTGA TGCTGCAGTT GCCCGAAGTG
ATGAAGGCCA CCGAGCAGAT GGCGCGCGAA CGCGCCTCGG GGCAGAACTC GCTGTTCGGC
GGTCCGGACC CGAGCGCGCC GGCAATGCGC CTGGACCTGC CCGAAAGCAA GGAATGGCCG
CTGGGCCAGC TGCTCACCAG CGAGCGCGAA ACGCTGGGCT TCTACCTCAG CGGCCACCCG
TTCGACCCGC ACCGCGAAGA AGTGCGCGAG CTGGTCGGCT GCGACCTGGG CGCGCTGGAA
AAGATCCTCG CGTCGCAACA ACGTGGCGCC GGTGGGGGCG GCGGCGATGG CGAAAAACGC
GCCTGGCGTC CTGAAGTGAG CGCCATTCTT GCCGGCCAGG TGATCGGCGT GCGCCGCAAG
GGCGACAGCC AGGTGTTCGT GCAATTGGAA GACGGCCGTG GCCGGGTCGA ATGCAGCGCG
TTCTCCGATG CGATGGCCGA GTTCGGCCAC CTGCTGACCC GCGACCGCAT CCTGATCGTC
AAGGGCGGCC TGCGCGAGGA CGAATTCAAC GGCGGCTACA GCCTGCGCAT CCGCCAGTGC
TGGGACTACG AGCAGATCTG CGCCGACCAC GCGCAGCGCC TGTCGCTGCG TCTGGATCTG
CGCGAAAAAC AGGCCTTCAA GCGCATCGAC GCGCTGCTGG CCAAGCACCG CCCCGGCAAG
ACTCCCTTGC GCCTGGACCT GTTGCTACGT GCCCAGAGCG GTGGCGTGGC CGGCATGCTC
GACCTCAACG GCAGCCACTC GGTGCGCATC GACCAGCAGC TCATGGACAG CCTGCGCGCC
GACCCCGCGG TGCGGACGTT GAAGATCAAG TACAGCCCAC CGTGGGCGTG A
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| Protein sequence | MSTSRFVHLH VHTEFSLADS TIRVPEKPDQ ADPKKAKQAN LLSRAVEIDM PALAVTDLNN
LFALVKFYKA AEGVGIKPIA GADVMIATPD MTPWRMTLLC RDREGYLSLS RLLTRAWMEG
HRPEGGVAIH PEWLQAGHAN LFALAGRDSL AGRLFSEGRA DLAEQQLADW QRVFGDGLHL
ELTRTGRECE ERFNQFALNA AGVRGLPVVA SNDVRFLYAS DFNAHEARVC ISSGRVLDDP
KRPRDYSDQQ YLKSSEEMAA LFADIPDAID NTHALAQRCN IEMRLGTYFL PAYPVPDDET
LDSWIRSQSR DGLAARLEKS PIAPGKTRQD YVDRLEFELD TIINMGFPGY FLIVADFIQW
GKNQGIPIGP GRGSGAGSLV AWALQITDLD PLPYNLLFER FLNPERVSMP DFDIDFCMDR
RDEVIDYVAR KYGRERVSQI ITYGTMAAKA VVRDAGRVLG FTYGLVDSVA KLIPNILGIT
LKDAMGEGKD SEMASPELIQ RYQVEDDVRD LMDLARQLED LTRNAGKHAG GVVIAPEPLS
EFCPLFAEHD EDGRGKNPVT QFDKDDVEAV GLVKFDFLGL RTLTIIDWAV KAINVRHARA
GIDPVDITTI PLDDVPTYKG VFALGNTGAV FQFESSGMRR LLKDARPDRF EDLIALVSLY
RPGPMDLIPD FNARKHGQQE IVYPDPRTEV ILKDTYGIMV YQEQVMQMAQ IVGDYSLGGA
DLLRRAMGKK VPAEMAKHRE IFREGAAKGG VSAAKADEIF DLMEKFAGYG FNKSHAAAYA
LVSYQTAWLK RHYPAEFMAA TLSSDMDNTD KVVGFLDEVR NLGLTVKPPR VNESAYMFEA
ASPDTIQYGL GAIKGVGQGA CEAIVEERQR GGPYTTLLDF CTRVGTTKLN RRTLEAMINA
GAMDGLGKNR ASLMLQLPEV MKATEQMARE RASGQNSLFG GPDPSAPAMR LDLPESKEWP
LGQLLTSERE TLGFYLSGHP FDPHREEVRE LVGCDLGALE KILASQQRGA GGGGGDGEKR
AWRPEVSAIL AGQVIGVRRK GDSQVFVQLE DGRGRVECSA FSDAMAEFGH LLTRDRILIV
KGGLREDEFN GGYSLRIRQC WDYEQICADH AQRLSLRLDL REKQAFKRID ALLAKHRPGK
TPLRLDLLLR AQSGGVAGML DLNGSHSVRI DQQLMDSLRA DPAVRTLKIK YSPPWA
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