| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_04849 |
|---|
| Symbol | |
|---|
| ID | 6304994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 1477498 |
|---|
| End bp | 1480251 |
|---|
| Gene Length | 2754 bp |
|---|
| Protein Length | 917 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642638767 |
|---|
| Product | RhsD protein |
|---|
| Protein accession | YP_001912644 |
|---|
| Protein GI | 188575715 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0148662 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAATATG TCGATGGTCC GTTAGCGGGC TCCGTCGATC GAACTAATTT TCTTTATTAT
CAAAATTCCG CATCAGGCTG TGCCAATCCC CCCTCAGCGT GCCAATATCG CAAAGGCGAT
CTCTGGAAAG TGACTGACGC TCTCGGTCAC GTGACAGAAA CACTGTCTTA CGACGGCGCA
GGCCGCCCGC TGTCCATCAA GGACGCCAAC GGCATCGTCA CCGATTACAC CTACCACCCG
CGCGGTTGGC TGACCGCCAC CAAGGTGCGC GGCGCCGATG CGTCCAGCGA GGCCGATGAC
CGCATCACCC GCATCGACTA TTGGCCCACC GGCCTGGTCA AGCAGGTCAC CCAGCCCGAT
GGCGCGTTCA CTGCCTTCAC CTACGATGCG GCGCATCGGC TGACCGACGT CACCGACAAT
GCGGGCAATA CCGTCCACTA CACGCTGGAC AACGCCGGCA ATCGCGTCAA GGAAGACACC
AAGGACGCGG CCGGCACGTT GAAGCGCACG CTCTCGCGCG TGTACAACCA GCTCGGCCAG
CTCAAGACGC AGGCCACTGC CGCCAGCGAC TCCACCGACT TCACGTACGA CGCCAACGGC
AACGCCACCA AAGTGACCGA TGCGCTGGCA ACCGCAACCC AGAGCGAGTA CGACCCGCTC
AACCGGCTCT CGCGCACGCT GCAGGATGTT GCCGGCATCA AGGCCGACAC AAAATTCGAG
TACGACGCGC TCGATAATCT GACTAAAGTC ACCGACCCCA AGGGCCTGGA TACCAAATAC
GAGTACAACG GGTTTGGCGA CCTGGTGAAG CTCACCAGCC CGGACACCGG CGTCACCCGC
TACACCTACG ACAGCGCCGG CAACCGTGCC ACCCAGACCG ACGCGCGCGG CAACACCACC
GCCTACAGCT ACGACGCGCT CAATCGCCTG ACCAAGGTCA CCTACCCCAC CTCCAGCCTC
AACGTCACCT ACACCTATGA CGTGACGCAG ACGGCCTGCT CGAGCGGGGA GACCTTCTCC
ATCGGCCGCC TGACCAAGAT GCAGGACGGC GGCGCCATCA CCCAGTACTG CTACAACCGC
TTCGGCGATC TGGTGCGCAA GGTGCAGACC AGCAACGGCA CCACGCTGGT GCTGCGTTAT
GACTACACCG TCGGCGGCCA GTTGCGGCGT ATGACGTATC CCGATGGGGC AGTGGTCGAT
TACGTGCGCA ACACGCAAGG CCAGACCACC GAGGTCGGCG TGACCCCGGC CGGCGGTAGC
CGGCAGGTGC TGCTGGGCAA TGCCAGCTAC TACCCGTTCG GCCCCGCCGC CGGCTGGACC
TACGGCAATG GCCGCACCCT CGCTCGCCAG TACGATCTGG ACTACCGCCC GCGGGCCATC
CAGGACACCC GCCCGGGTGG GCTGGAGGTG GGCTTCGGCT TCGACCCGGC CGGCAACCTC
ACCGCGCTGA CGCCGGCAGG CAACACCACA CCGGAAATTG GGCTGGGCTA CGACACCCTG
GGCCGCCTGA CCGGACTCAA GGACGGCCGC ACCGGCACGC TGATCGACGG CTACAGCTAC
GATGCCACCG GCAACCGCCT CAGCGCCAAG GTCGGCACGG CCACGCAGAT CTACACCTAT
CCAACCGACA GCCATCGCCT GCGTGCGGTA GCGAGCGTGG CACGCACGTA CGACAAGACG
GGCAACACGC TGACGATCGG CGGCAAAGCA AGAGAGTTCT TCTACGATGC CTCCGGCCGC
ATGAGCATGG CCAAGCGTGC CGGCGCGCTG GTGATGAACT ACCGCTACAA CGGTAAAGGT
GAACAGGTGC AGCGCTTCCT CGGCACCACC AACACCTACA CGCTCTACGA TGAAGCCGGC
CACTGGCTGG GCGACTACGA CAGCAACGGT GCGCCCAAGC AGCAGGCGAT CTGGTTGGAT
GATCTACCGG TCGGCCTGCT GGCTAACGCC AACAAGCTGC ACTACATCGA ACCCGATCAC
CTGGGCAGCT CACGCGTGGT GATCGACCCC ACCCGCAATG TGGCGGTGTG GACGTGGAGC
TTGAAGGGCG AAGCCTTCGG CAACACCGCG CCGAATCAGG ATCCGGATGG CGATGGTGCA
GCGCTGGTGT TGGATATGCG CTTCCCGGGG CAGCGGTTTG ATGCGGCGAG TGGGTTGAAT
TACAACTACT TCCGTGACTA TGAAGCGGCT ACGGGCAGGT ATGGGCAGAG TGATCCGATT
GGTCTAGAAG GTGGATTTAG TTCCTACGCC TATGTCAGCT CTAGACCTCT AAGCAGCGTA
GATCATAACG GACTGCAAGC TATTCCTCTT CCTATGCCGC TTCCCATCGG ACCTCCAGGA
TTCGGTGAAG GAGAAAATGG CATGGATGAT TTTGGTGGCC CGCGTCTACC GGAGCCGACC
GCAGCGGGAG TGTTTGGCGG ACTTTATCAA ATTTCCAAGA CAACACCTGG TTTTTCGTTG
CTTGATCAGT CGCTCACAAT AGCCAACGCA CTATGCCCTG AAAACAATGA CGAGCTCTGC
GAAAAAGCAA AGACAGATGC ACGAAACGCC CATTTTAAAC TGATCACAAA AAGAATCCCT
CAATTCCAAA CGGGTGGGAC TAGAGGTCGC GACCCTGGCC ACTTACAGGC AATAATTCAA
TTGCAAGCGC GTCTGCGCGA CGCTCTAAGA AGGGTGCGAA TGTACTGCAA GCCATTACCA
GCCGAGTATG GCGAATGGGA ACGCGTTGCG AATTTAAACG CACCAGGCTT TTAA
|
|---|
| Protein sequence | MKYVDGPLAG SVDRTNFLYY QNSASGCANP PSACQYRKGD LWKVTDALGH VTETLSYDGA
GRPLSIKDAN GIVTDYTYHP RGWLTATKVR GADASSEADD RITRIDYWPT GLVKQVTQPD
GAFTAFTYDA AHRLTDVTDN AGNTVHYTLD NAGNRVKEDT KDAAGTLKRT LSRVYNQLGQ
LKTQATAASD STDFTYDANG NATKVTDALA TATQSEYDPL NRLSRTLQDV AGIKADTKFE
YDALDNLTKV TDPKGLDTKY EYNGFGDLVK LTSPDTGVTR YTYDSAGNRA TQTDARGNTT
AYSYDALNRL TKVTYPTSSL NVTYTYDVTQ TACSSGETFS IGRLTKMQDG GAITQYCYNR
FGDLVRKVQT SNGTTLVLRY DYTVGGQLRR MTYPDGAVVD YVRNTQGQTT EVGVTPAGGS
RQVLLGNASY YPFGPAAGWT YGNGRTLARQ YDLDYRPRAI QDTRPGGLEV GFGFDPAGNL
TALTPAGNTT PEIGLGYDTL GRLTGLKDGR TGTLIDGYSY DATGNRLSAK VGTATQIYTY
PTDSHRLRAV ASVARTYDKT GNTLTIGGKA REFFYDASGR MSMAKRAGAL VMNYRYNGKG
EQVQRFLGTT NTYTLYDEAG HWLGDYDSNG APKQQAIWLD DLPVGLLANA NKLHYIEPDH
LGSSRVVIDP TRNVAVWTWS LKGEAFGNTA PNQDPDGDGA ALVLDMRFPG QRFDAASGLN
YNYFRDYEAA TGRYGQSDPI GLEGGFSSYA YVSSRPLSSV DHNGLQAIPL PMPLPIGPPG
FGEGENGMDD FGGPRLPEPT AAGVFGGLYQ ISKTTPGFSL LDQSLTIANA LCPENNDELC
EKAKTDARNA HFKLITKRIP QFQTGGTRGR DPGHLQAIIQ LQARLRDALR RVRMYCKPLP
AEYGEWERVA NLNAPGF
|
|---|
| |