| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_04745 |
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| Symbol | mfd |
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| ID | 6304893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 1379055 |
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| End bp | 1382519 |
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| Gene Length | 3465 bp |
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| Protein Length | 1154 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642638666 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001912543 |
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| Protein GI | 188575614 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.982613 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGTCGC CTACCTTCCC CTCGCCGCCG CTGCCCAGGT CTGGCCAGCT CCGCGCCTAC
TGGCGCGCCC CGTCCTCTCC GACCGCGCTG GCGTGGTCGA TTGCGCGCGC AGCCGAGGCG
CATGCCGGCC CGCTGCTGGT CATCGCACGC GATAACCAGA GCGCACACCA GATCGAAGCG
GATCTGCATG CCTTGCTCGG CGAGCACTCC GCGCTGCCGG TGGTGCCGTT TCCCGATTGG
GAAACCCTGC CCTACGACCA GTTCAGCCCG CACCCGGAAA TCATCAGCCA ACGGCTGGCC
GCCCTGCACC GCCTGCCCGG CCTGAGCAAG GGCGTGGTGA TCGTGCCGGT GCAGACCTTG
CTGCAGCAGC TGGCCCCTCT GAGCTACATC GTCGGCGGCA GTTTCGACCT TATCGTCGGC
CAGCGGCTGG ATCTGGGTGC GGAAAAACGC CGGCTGGAAA GCGCCGGCTA CCGCAACGTC
CCGCAGGTGA TGGACCCGGG CGATTTCGCC GTCCGCGGCG GCCTGCTGGA CGTCTTTCCG
ATGGGCGCAG ACACGCCATT GCGCGTCGAG TTGCTGGATG AGGATATCGA TTCGATTCGC
GTGTTCGACC CCGAATCGCA GCGTTCGCTG GACAAGGTGG AGGCAGTCAA GATGCTGCCC
GGCCGCGAAG TACCGATGGA CGATGCCAGC GTGGAGCGCG TGCTGGCCTG CCTGCGCGAA
CGCTTCGACG TCGATACCCG GCGCAGCGCG CTGTATCAGG ATCTCAAATC CGGGCTGGCA
CCGTCGGGCA TCGAGTATTA CCTGCCGATG TTCTTCGCCA AGACCGCAAC GCTGTTCGAT
TATCTGGACA AGCGCGTACT GCCGGTGATC GCCACGGGCG TGTCCACTGC CGCCGATACC
TTCTGGGCGC AAGCACAGAA CCGCTACGAA CAGCGCCGCC ACGATATCGA GCGCCCGCTG
CTGCCGCCGG ACGAGTTGTA TCAATCGCCC GATGCGCTGC GCGAGGGCCT CAACAAGCTG
GCGCGTATCG AAGTGTGGGC CAGCGATCAT GCACGCATCG AGGAAGCCGC CCCGCTCGGC
GACCAACCCT TGCCGCCGCT GCCGGTGGCC GCGAAGGATG CCCCGGCCGG CCAGGCGCTG
GCTTCGTTCC TGAGCCATTA CCCGGGCCGC GTGCTGGTGG CCGCCGATTC GGCCGGCCGC
CGCGAAGCCT TGATGGAAGT GCTGGCCGCC GCGCAGTTGA AGCCGGAGGT GGTCGCCGAT
GTGCCGGCGT TCCTGGCGGG CACGCTGCGT TTCGGCATGA CCGTGGCGCC GCTGGAAGAT
GGCTTTGCGC TGGATCAGCC GCAGATTGCG CTGCTCACCG AGCGCCAGCT GTTCCCCGAG
CGGGCCAACC AACCGCGCCG CACGCGCCGG GTTGGACGCG AGCCGGAAGC GATCATCCGC
GACCTGGGCG AACTGTCCGA AGGCGCGCCG ATCGTGCACG AAGACCACGG TGTGGGCCGT
TACCGCGGGC TGATCGTGCT CGATGCCGGC GGCATGCCCG GTGAGTTCCT GGAAATCGAA
TACGCCAAGG GCGACCGGCT GTATGTGCCG GTGGCGCAGC TGCATCTGAT CAGCCGTTAC
TCGGGCGCCT CGGCCGAGAC CGCGCCGCTG CATTCGCTGG GCGGTGAGCA ATGGACCAAG
GCCAAGCGCA AGGCGGCCGA AAAGGTCCGC GACGTCGCTG CCGAATTGCT GGAGATCCAG
GCACGTCGCC GTGCACGCGC CGGCCTGGCG TTGCAGGTGG ACCGGGCGAT GTACGAGCCG
TTCGCAGCCG GGTTTCCGTT CGAGGAAACC GCCGACCAGC TCGCTGCCAT CGATGCGACG
CTGCGCGATC TGGGCAGCAG CCAACCGATG GACCGCGTGG TCTGCGGCGA CGTCGGTTTC
GGCAAGACCG AGGTTGCGGT GCGCGCCGCC TTCGCCGCCG CCAGCGCCGG CAAACAGGTC
GCGGTGCTGG TACCCACCAC GTTGCTGGCC GAACAGCATT ACCGCAATTT CCGCGACCGT
TTCGCCGATT ACCCGATGAA GGTGGAAGTG CTGTCGCGCT TCAAGAGCAC CAAGGAAATC
AAGGCCGAGC TGGAGAAGGT CGCCAGCGGC GACATCGACG TGATCATCGG CACGCACCGC
TTGTTGCAGC CGGATGTGAA GTTCAAGGAT CTTGGGTTGG TCGTCGTCGA CGAAGAACAA
CGCTTCGGCG TGCGGCAGAA GGAAGCGCTC AAGGCGATGC GCGCCAACGT GCACCTGCTC
ACGCTCACCG CCACACCGAT TCCGCGCACG CTCAATATGG CCATGGCCGG CCTGCGCGAT
CTGTCGATCA TCGCCACCCC GCCGCCGAAC CGCCTGGCGG TGCAGACCTT CATCACCGCC
TGGGACAACA CGCTGCTGCG CGAAGCCTTC CAGCGCGAAC TCAGCCGCGG TGGCCAGCTG
TATTTCCTGC ATAACGATGT GGAAAGCATC GTGCGCATGC AGCGCGATCT GTCCGAGCTG
GTGCCGGAAG CGCGCATCGG CATCGCGCAT GGGCAGATGC CCGAGCGCGA GCTGGAACGG
GTGATGCTGG ATTTCCAGAA GCAACGCTTC AATGTGTTGC TGTCGACCAC GATCATCGAA
TCGGGCATCG ATATTCCCAA CGCCAATACC ATCATCATCA ATCGCGCCGA CCGCTTTGGC
CTGGCGCAGT TGCATCAGTT GCGTGGCCGC GTCGGCCGTT CGCACCACCG CGCCTACGCG
TACCTGGTGG TGCCGGATCG CCGCGCGATG ACCTCCGACG CAGAAAAGCG CCTGGAAGCG
ATCGCCTCCA TGGACGAGCT CGGCGCCGGC TTCACCCTGG CCACGCACGA TCTGGAAATC
CGCGGTGCCG GCGAATTGCT GGGCGAAGAC CAGAGCGGCC AGATGGCCGA GGTCGGTTTC
AGCCTCTATA CCGAATTGCT GGAGCGCGCG GTGCGCAGCA TCCGCCAGGG CAAGCTGCCC
GACCTGGATG CCGGCGAAGA AGTGCGCGGC GCCGATGTCG AACTGCATGT GGCCGCGCTG
ATTCCCGAGG ATTATCTGCC CGACGTGCAT ACGCGCCTGA CCTTGTACAA GCGCATTTCC
AGCGCACGCG ATCCAGAAGC GCTGCGCGAA CTGCAGGTAG AGATGATCGA CCGCTTCGGT
TTGCTGCCGG ATCCGGTCAA GCACCTGTTC GCCATTGCCG CGCTCAAGCT GCAGGCCAAT
GCGTTGGGCG TGCGCAAGCT GGATCTGGGC GAAAACGGCG GCCGGCTGGT GTTCGAGGCC
AAGCCGACGA TCGACCCGAT GACCATCATC CAGATGATCC AGAAACAGCC GAAGATCTAC
ACGATGGATG GCCCGGACAA GCTGCGCATC AAACTGCCGA TGCCCGAAGG CGCGGACCGT
TTCAATGCGG CACGCGGCCT GTTGGCAGCC CTGGCACCGG GCTGA
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| Protein sequence | MPSPTFPSPP LPRSGQLRAY WRAPSSPTAL AWSIARAAEA HAGPLLVIAR DNQSAHQIEA
DLHALLGEHS ALPVVPFPDW ETLPYDQFSP HPEIISQRLA ALHRLPGLSK GVVIVPVQTL
LQQLAPLSYI VGGSFDLIVG QRLDLGAEKR RLESAGYRNV PQVMDPGDFA VRGGLLDVFP
MGADTPLRVE LLDEDIDSIR VFDPESQRSL DKVEAVKMLP GREVPMDDAS VERVLACLRE
RFDVDTRRSA LYQDLKSGLA PSGIEYYLPM FFAKTATLFD YLDKRVLPVI ATGVSTAADT
FWAQAQNRYE QRRHDIERPL LPPDELYQSP DALREGLNKL ARIEVWASDH ARIEEAAPLG
DQPLPPLPVA AKDAPAGQAL ASFLSHYPGR VLVAADSAGR REALMEVLAA AQLKPEVVAD
VPAFLAGTLR FGMTVAPLED GFALDQPQIA LLTERQLFPE RANQPRRTRR VGREPEAIIR
DLGELSEGAP IVHEDHGVGR YRGLIVLDAG GMPGEFLEIE YAKGDRLYVP VAQLHLISRY
SGASAETAPL HSLGGEQWTK AKRKAAEKVR DVAAELLEIQ ARRRARAGLA LQVDRAMYEP
FAAGFPFEET ADQLAAIDAT LRDLGSSQPM DRVVCGDVGF GKTEVAVRAA FAAASAGKQV
AVLVPTTLLA EQHYRNFRDR FADYPMKVEV LSRFKSTKEI KAELEKVASG DIDVIIGTHR
LLQPDVKFKD LGLVVVDEEQ RFGVRQKEAL KAMRANVHLL TLTATPIPRT LNMAMAGLRD
LSIIATPPPN RLAVQTFITA WDNTLLREAF QRELSRGGQL YFLHNDVESI VRMQRDLSEL
VPEARIGIAH GQMPERELER VMLDFQKQRF NVLLSTTIIE SGIDIPNANT IIINRADRFG
LAQLHQLRGR VGRSHHRAYA YLVVPDRRAM TSDAEKRLEA IASMDELGAG FTLATHDLEI
RGAGELLGED QSGQMAEVGF SLYTELLERA VRSIRQGKLP DLDAGEEVRG ADVELHVAAL
IPEDYLPDVH TRLTLYKRIS SARDPEALRE LQVEMIDRFG LLPDPVKHLF AIAALKLQAN
ALGVRKLDLG ENGGRLVFEA KPTIDPMTII QMIQKQPKIY TMDGPDKLRI KLPMPEGADR
FNAARGLLAA LAPG
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