| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_04712 |
|---|
| Symbol | |
|---|
| ID | 6304860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 1339346 |
|---|
| End bp | 1340356 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 642638633 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_001912510 |
|---|
| Protein GI | 188575581 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4253] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCAACTTG CGACCACCCA GGCAGCCACG CAACTGAACC TGGGGCACCT GATCCACCAG
GCCGACAACT ACCGCGGCAG CTTCCGCGGG GAAGGCTTCG AACTGCGCAC CGACGCGTGG
GGCGCGGTGC GGGCCAGCTC GGGGCTATGG CTGAGCAGCT ACGGCCGCAG CGGCGGCCCG
GCCGGCGAGG CGACCCAGCC CAGCGCATTG CTGAGCCAGC TGCAGACGCT GGGCAAGACG
TTCTCGCAGG CGGCGGGCAC GCACCAGACG GTGAAGCTGG CCGCGCACGA AGGCGTGGGC
CAGGCGAACC ACTCCCAGCT GATCGCCGAG CAGGCGCCGC TGCCGGCGCT GCTGACCAGC
GTGAAGACCA CGGTGCCGGG CACGGCCTAC GCCGACGCCA AGGGCGCGGC GGCCGAGCGC
CGCGCCAGCC CGGGCGACGA CCGGGTGCCG CACACCGGCG ATGCGCTGCT GGGCCTGGCG
GCGCCAGCGG GGATCGGCGT GGTGGCCGGC CAGGGCCTGA GCTGGAGCGT GGGCGAGACG
CTGACGCTGG CCAGCGGCGC GGGCAGCGAA GCGGCCATCG CCGGCGACGC CCGGCTGCAC
AGCGGCCAGG CAATCGGCGT GCTGGCCGCG GCGGTGGACG GCCGGCAAAC GCAAGCCAAC
AGCCTGAGCC TGGTCAGCGG CGAAGGCGCG CTGGACGTGC AGGCGCAGTC GGACGACGTG
CGCGTACAGT CGAAAGAAGG CCTGAAGCTG ATCAGCGCCA ACGCCGACGT GGCCCTGGCG
GCGGGCAAGA CCCTCCACCT GGCGGTGGCC GGCGGGGCCA GCGTGACCAT CGAAGGCGGC
AACATCACCG TCGCCTGCCC CGGCACCATC ACCGTGCATG CGAGCAAGAA GTCGTTCGTG
GGGCCAACGA CGCTGAACCG GTCGTTTGTC GCTTGGCCGC AAAGCAACTT GAATGCGCCT
TGCATGATGC AGGCTGCGGC GACCAATAGC GCGTTTGTGC GAGTGGACTA A
|
|---|
| Protein sequence | MQLATTQAAT QLNLGHLIHQ ADNYRGSFRG EGFELRTDAW GAVRASSGLW LSSYGRSGGP
AGEATQPSAL LSQLQTLGKT FSQAAGTHQT VKLAAHEGVG QANHSQLIAE QAPLPALLTS
VKTTVPGTAY ADAKGAAAER RASPGDDRVP HTGDALLGLA APAGIGVVAG QGLSWSVGET
LTLASGAGSE AAIAGDARLH SGQAIGVLAA AVDGRQTQAN SLSLVSGEGA LDVQAQSDDV
RVQSKEGLKL ISANADVALA AGKTLHLAVA GGASVTIEGG NITVACPGTI TVHASKKSFV
GPTTLNRSFV AWPQSNLNAP CMMQAAATNS AFVRVD
|
|---|
| |