| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_04696 |
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| Symbol | imcF |
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| ID | 6304843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 1314045 |
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| End bp | 1317737 |
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| Gene Length | 3693 bp |
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| Protein Length | 1230 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642638616 |
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| Product | ImcF-related family |
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| Protein accession | YP_001912493 |
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| Protein GI | 188575564 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00810675 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCTCG GCTTGCTCGC CGCCGCCGCA GTCGCCTACT TCGGCACCGA GGGCTTGCGC
GAAATTGGCC TGTGGGCGGC GGCGGTGCTG GCGGTCTGTC TGACGATATG GCTGCTGGTG
TGGATCGTGC GCCGGATCAT TGCGCGCCGC GCTGCGCGCA GCCTGGATGC GATGGTGCAA
GGCGAAGCCG ATCGCGCGGT CGCCGCCGCG CAGCCGGCCA ACCGCGCCGA CACCGAAGCG
CTGCGCTCGC GCATGTTAGA GGCGGTCAAG GCGATCAAGT CCTCGCGCCT GGGCGTGCTC
AAGGGCAAGG CGGCGCTGTA CGAACTGCCG TGGTACGTGA TCATTGGCAA TCCTGCGGCT
GGCAAGAGCA CCGCGATCCT CAATTCCGGG TTGCAGTTCC CGTTCGAGGA CAATCGCGGC
AACGTGATCC AGGGCATCGG CGGCACGCGC AATTGCGATT GGTACTTCAC CATGACCGGT
ATCGTGCTTG ATACCGCCGG TCGGTATTCG GTCAGTGTCG AAGACCGCCT GGAATGGCTC
ACCTTTCTCG CGCTGCTGAA AAAGCACCGG CCGCGCGCGC CGATCAACGG CATCATCATC
GCCGCCAGCA TCGCCGAACT GTCCGGTAGC AAGCCCGAGT TCGCGATCGA GCTGGCCAAG
AACCTGCGCC AGCGCGTGCA GGAAATTACC CAGCGCCTGG AAGTGTTCGC GCCGGTGTAC
GTGGTGTTTA CCAAGGCCGA CCTGATCGCC GGCTTCTCCG AATTCTTCCA CAATCTGGAT
CCGTCCGAGC GCGAGAACGT GTGGGGTGCG ACCCTGCCCT ACGATCCGAC CGCCAATACC
GATGCGCTGG CCGCCTTCGA CACTCATTTC GACGAACTGG CCGAAGGCCT CAAGGAAATG
AGCCTGGCGC ACATGGCGAT GCAGCGTGGG CGTCAGGTGT CGCCGGGCCT GCTGACACTG
CCGCTGGAGT TCGTCGGCAT CAAACCGGCG CTGCGCACCT TCATCGCCAC GCTGTTCGAA
GAAAACCCCT ATCAGTTCAA GCCGGTGTTC CGCGGTTTCT ACTTCAGCAG CGCGTTGCAG
GAAGGCCATT CCGTGCACCA CGCCTCCGAG CGGGTGAGCC GCCAGTTCGC GCTGCAGGCG
CGTGCGCAAT CCGGCGAAGC GGTGCCGTCG GGACAGACCG CTTACTTCCT GAAAGACCTG
TTCCGCAAGG TCATCTTCAC CGACAAACAG CTCGTCCGGC AGTACTCCAG CCCGCACCAG
AACCGCCTGC GCTACGGCGT CTTCCTCGGT GGCGTCGCCG TGCTGGCGTT GGCGCTGGGT
CTGTGGACCT GGTCGTACAC CACCAACGTG CAACTGGTGA ACAACGCCAC CAAGGATCTG
GATCAGGCCG TGCGCGTGCA GGCCAACCGG GTCGACTTGC AATCGCGCAT CGACGCGCTG
CTGCTGTTGC AGGATCGGCT CGAGCAGCTG GACCGCTACA AGCAAAAGGG CGGCATCACC
TCCGGGCTGG GCCTGTACCA GGGCGGCAAC ATCCGCAAGA AGCTGCTGGC CGAGTACTAC
AACGGCATGC GCCAGGTGAT GCTTGAGCCG ACCACCGCCA ATCTGGAGTC GTTCCTGGGG
CAAGTGGTCA GCGAGCGCGA CAGGCTCGGC AAGGCGGCCG GCCCGCAGCA GGCCGCGCAG
CAAGACAGCG TGCTGTATCA GGACGCGTCG CCGACCGATA CCAACGACGC CTACAACGCG
CTGAAGACCT ACCTGATGCT GGGCAACCGC AAGCACGTGG AGAGCGCGCA CCTGACGCAG
CAGCTGACCC TGTTCTGGCG CGGCTGGCTG GACGCCAATC GCGGCCAGAT GACCCGCGAG
GAGATGACCC GCGCGGCCGA GAAGCTGATG ACGTTCTACG TCGCCCAGGC CGAAGATGCG
CAGTGGCCGC AGGTGCAGAC CAAGGTCACC CTGGTCAACG ACAGCCGCGA GGCGCTGACC
CGGGTGATGA AGGGCCAGCC GGCGATGCAA CGCGTATTCG CGCAGATCAA GGCGCGCGCG
GCGGCGCGCT TCCCCACGGT GACGGTCAAC GCGCTGATCG GCGAGGAAGC CAACAGCGGC
GCGATCACCG GCAGCTATGC CATTTCCGGG GCGTTCTCGC GCGAGGCGTG GGAAGAATAC
GTCAAGGACG CGATCAAGGA AGCGGCCAAT ACGCAGCTCA GCACCACCGA CTGGGTCCTG
GACACGAGCG AGCAGAGCGA CCTGTCGCTG GCCGGCAGCC CTGAGCACGT CGCGCGCGAA
CTGGTGACGG CGTACAAGCA GGAATACGCC AAGGAGTGGC GCAAGTTCAT CCAGGGGATC
AGCGTGGCGC CGTTCCATGG CTTCGACCAG GCGCTGTCGC GGATGAATCG CATCGGCGAT
CCGGCCAACT CGCCGTTGCG CAAGCTGCTG GAAAAGATCA ACGAGCAGAC CATCTGGGAC
AACCCGATGG CCGACGCCTT ATCGAAGAAG GCGTCCGGCG GGGTCGTCGC CTGGTTCCAG
CGGGTGATCC TGCGCCGCGA TCCGGCCGAA GCCGGCAAAG CTGAGCAGCA GCCGGTCGGC
CCGATCGGCA AGACCTTCGA GGGCCTGGCG CGGCTGATGA CCAAGCGCAC GGACCAGCCG
GCGGTCATTG ATGCCTACTT CGACAAGTTG GCCAAGTTGC GCACGCGCAT GAACGCGATC
AAGAACCAGG GCCAGATCGG CGTCGGCGCG CGCAAGCTGA TGCAGGACAC CTTCAGCAAC
GAAGGCTCCG AACTCAGCGC CGCGCTGACC CTGGTGGACG AGCAGATGCT GACCGGGCTG
GATGAAACCC AGCGCGACGC GATGCGTCCG CTGTTGCTGC GTCCGTTGAC CCAGACCTTC
GCCGCGCTGG TGCCGCCGAC TGAGAACGAG ATCAACCGGG TGTGGGCGGC GCAGGTCTAC
GAACCGTTCC GTAACGGCAT CGGCCAGCGC TATCCGTTCA ACCTCAACAC GGACGTGGAT
GCCGCCCCCG GCGACGTGGC TGCGATCTTC GGCGCCAGCG GCGCGATCGC CGCGTTCAAC
AAGGACGCAC TCGGCACCTT GGTGATCCAG CGCGGCAACC TGCTCGAATC GCGGCGTTGG
GCGGGCATCG GCATCACCTT GTCCAGCGAA CTGGTGGCCA ACTACGGCAA CTGGGTCAGC
GGCCAGTCCG GCGCGGTGGC CAAGGACGTC AGCATCTTCG AGCTCCTGCC GATGCCGGCG
GTAGGCGCGA TCGAATACAC CATCGACATC TCTGGCCAGA CGCTGCGCTA CCGCAACACC
CCGCCGCAGT GGATGACCAT GCAGTGGCCG AACGCCGGTG CGGTGCCCGG TGCCAAGATC
ACCGCGGTCA CCAGCGACGG GCGCAGCGTC GAGATGTTCA ATGCGCCTGG CGACAATGGC
CTTGGCCGCT TGATCAAGGC AGCCGCCCAG GAACCCGTGG ACGATGCCAC CCGTCGCTTC
ACCTGGAGCG ACCAAGGCGT GTCCATCAGC GTGCAGATGC GCATCGTGCA GAGTGCCGGC
AAGGCTACCG GGGGGGGCGA CTGGCAGCGT GGCCTGCAAC TTCCGGCGAC GGTGGCCGGT
AGCCCGACAA CCGTCGGTGC CGATGCGCCA GCGGCCGCTG CGCCGCCCGG TTCGGTTCCG
GCGGGTGCGT CCGCACAAGA AGGTGGCCAA TGA
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| Protein sequence | MILGLLAAAA VAYFGTEGLR EIGLWAAAVL AVCLTIWLLV WIVRRIIARR AARSLDAMVQ
GEADRAVAAA QPANRADTEA LRSRMLEAVK AIKSSRLGVL KGKAALYELP WYVIIGNPAA
GKSTAILNSG LQFPFEDNRG NVIQGIGGTR NCDWYFTMTG IVLDTAGRYS VSVEDRLEWL
TFLALLKKHR PRAPINGIII AASIAELSGS KPEFAIELAK NLRQRVQEIT QRLEVFAPVY
VVFTKADLIA GFSEFFHNLD PSERENVWGA TLPYDPTANT DALAAFDTHF DELAEGLKEM
SLAHMAMQRG RQVSPGLLTL PLEFVGIKPA LRTFIATLFE ENPYQFKPVF RGFYFSSALQ
EGHSVHHASE RVSRQFALQA RAQSGEAVPS GQTAYFLKDL FRKVIFTDKQ LVRQYSSPHQ
NRLRYGVFLG GVAVLALALG LWTWSYTTNV QLVNNATKDL DQAVRVQANR VDLQSRIDAL
LLLQDRLEQL DRYKQKGGIT SGLGLYQGGN IRKKLLAEYY NGMRQVMLEP TTANLESFLG
QVVSERDRLG KAAGPQQAAQ QDSVLYQDAS PTDTNDAYNA LKTYLMLGNR KHVESAHLTQ
QLTLFWRGWL DANRGQMTRE EMTRAAEKLM TFYVAQAEDA QWPQVQTKVT LVNDSREALT
RVMKGQPAMQ RVFAQIKARA AARFPTVTVN ALIGEEANSG AITGSYAISG AFSREAWEEY
VKDAIKEAAN TQLSTTDWVL DTSEQSDLSL AGSPEHVARE LVTAYKQEYA KEWRKFIQGI
SVAPFHGFDQ ALSRMNRIGD PANSPLRKLL EKINEQTIWD NPMADALSKK ASGGVVAWFQ
RVILRRDPAE AGKAEQQPVG PIGKTFEGLA RLMTKRTDQP AVIDAYFDKL AKLRTRMNAI
KNQGQIGVGA RKLMQDTFSN EGSELSAALT LVDEQMLTGL DETQRDAMRP LLLRPLTQTF
AALVPPTENE INRVWAAQVY EPFRNGIGQR YPFNLNTDVD AAPGDVAAIF GASGAIAAFN
KDALGTLVIQ RGNLLESRRW AGIGITLSSE LVANYGNWVS GQSGAVAKDV SIFELLPMPA
VGAIEYTIDI SGQTLRYRNT PPQWMTMQWP NAGAVPGAKI TAVTSDGRSV EMFNAPGDNG
LGRLIKAAAQ EPVDDATRRF TWSDQGVSIS VQMRIVQSAG KATGGGDWQR GLQLPATVAG
SPTTVGADAP AAAAPPGSVP AGASAQEGGQ
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