| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_04572 |
|---|
| Symbol | |
|---|
| ID | 6304716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 1204262 |
|---|
| End bp | 1204831 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642638490 |
|---|
| Product | RNA polymerase factor sigma-70 |
|---|
| Protein accession | YP_001912372 |
|---|
| Protein GI | 188575443 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTGGTGG GAACCCCTTT CGATCCACAA CCTGCCGCAC CGGCCGCCAC CGCGCCGGTT
TCGCTGGACG CCTTTCTGGC CGGCATCGGG CCGCGTGCCT TCCGGTTTGC CGAGGCCGGC
TTGCGGCACC GCGAAGACGC CCTGGACGCG GTGCAGGACG CCATGGTGAA GCTGCTCGGC
TACCGCGAGC GCCCGGCCGC CGAATGGACG CCGCTGTTCT GGAGCATCCT GCGCCGCCGC
ATCATCGACC TGCAGCGGCG GCGCAGCTTT CGCCTGAAAT TCTGGGCGCC GGCCGAGCGG
GCCGACGACG AAGGCCCGAT CGACTGGGCC GACCCCGACC CCGACACCGG CCCGGTCGAC
GAACAACAGC ATCAACAGGC CTACCAACGG CTGGTCGATG CATTGCGCAC ACTGCCGGCG
CGCCAGCGCG AAGCCTTCAC CCTGCGCGTG CTTGAAGACC TGGACGTGGC CACCGCCGCC
AAGGCGATGG GCTGCTCCGA AGGCTCGGTC AAAACCCACC TGTCGCGTGC GCGCGACGCG
CTGCAAAAAC AGTTTGAGGA TTTCCTGTGA
|
|---|
| Protein sequence | MLVGTPFDPQ PAAPAATAPV SLDAFLAGIG PRAFRFAEAG LRHREDALDA VQDAMVKLLG
YRERPAAEWT PLFWSILRRR IIDLQRRRSF RLKFWAPAER ADDEGPIDWA DPDPDTGPVD
EQQHQQAYQR LVDALRTLPA RQREAFTLRV LEDLDVATAA KAMGCSEGSV KTHLSRARDA
LQKQFEDFL
|
|---|
| |