Gene PXO_04539 details

Gene Information

• Locus tag: PXO_04539
• Symbol: ychF
• ID: 6304747
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 1234824
• End bp: 1235915
• Gene Length: 1092 bp
• Protein Length: 363 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 642638521
• Product: GTP-dependent nucleic acid-binding protein EngD
• Protein accession: YP_001912402
• Protein GI: 188575473
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0012] Predicted GTPase, probable translation factor
• TIGRFAM ID: [TIGR00092] GTP-binding protein YchF

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 0.910533
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGTATCA AATGCGGCAT CGTCGGCCTG CCCAACGTCG GCAAGTCGAC CCTATTCAAT 
GCGCTGACCA AGGCTGGCAT CGCTGCGGCC AACTTCCCGT TCTGCACCAT CGAGCCGAAC 
GTCGGCATCG TGCCGGTGCC CGATCCGCGC CTGAATCAGC TGGCCGGCAT CGTCAAGCCG 
CAAAAGCTGA TTCCCACCGC GGTCGAGTTC GTCGATATCG CCGGCCTGGT TGCTGGCGCG 
GCAAGCGGCG AAGGCCTGGG CAATAAGTTC CTGGCGCACA TCCGCGAGGT CGATGCGATC 
ACCCACGTGG TGCGTTGCTT CGACAACGAC GACGTGATTC ACGTCAATAA CAAGGTCGAC 
CCGATCGCCG ATATCGAAAC CATTGATACC GAGCTGGCGC TGGCCGATCT GGATAGCGTG 
GAAAAGGCCC TCAACCGTGC CGAACGCAGT GCAAAAGGCG GCGACAAGGA TGCAGCGGCG 
CGAAAGCCGG TGCTGGCCAA GTTGCAAGCC GCGCTGGCCG ACGGCAAGTC GGGTCGCGCC 
GCCGGTCTGG ACGACGAAGA AAAGGCGCTG GTGCGTGATC TGTTCCTGCT GACGCTCAAG 
CCTGTGCTTT ACATCGCCAA CGTGCTCGAG GACGGTTTCG AAAACAACCC GCACCTGGAT 
GCGGTACGCG CGCATGCGCT GGCCGAAGGT GCGGAAGTGG TGCCGGTGTC GGCCGCCATC 
GAAGAGGAGT TGTCCCAGCT CGACGACGAA GACCGCGACA CATTCCTGGC CGATCTCGGC 
CTGGAAGAGC CAGGGTTGAA TCGCGTCATT CGTGCGGCTT ACACACTGTT GGGTCTGCAG 
ACCTACTTCA CTGCGGGCGT CAAGGAAGTG CGTGCCTGGA CGGTTCGGGC CGGTTCGACG 
GCACCACAGG CCGCTGCCGT GATCCACACC GATTTCGAGA AGGGCTTCAT CCGGGCCGAG 
ACGATTGGCT TTGACGACTT CATCAAATAC CGCGGCGAAG CCGGTGCCCG CGATGCCGGG 
CGTCTGCGTC TGGAAGGCAA GGAATACCGC GTGCAGGAAG GCGATGTGCT GCACTTCCGT 
TTCAACGTCT GA 

 

Protein sequence

MGIKCGIVGL PNVGKSTLFN ALTKAGIAAA NFPFCTIEPN VGIVPVPDPR LNQLAGIVKP 
QKLIPTAVEF VDIAGLVAGA ASGEGLGNKF LAHIREVDAI THVVRCFDND DVIHVNNKVD 
PIADIETIDT ELALADLDSV EKALNRAERS AKGGDKDAAA RKPVLAKLQA ALADGKSGRA 
AGLDDEEKAL VRDLFLLTLK PVLYIANVLE DGFENNPHLD AVRAHALAEG AEVVPVSAAI 
EEELSQLDDE DRDTFLADLG LEEPGLNRVI RAAYTLLGLQ TYFTAGVKEV RAWTVRAGST 
APQAAAVIHT DFEKGFIRAE TIGFDDFIKY RGEAGARDAG RLRLEGKEYR VQEGDVLHFR 
FNV