Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_04530 |
Symbol | rpoB |
ID | 6304759 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 1241942 |
End bp | 1246093 |
Gene Length | 4152 bp |
Protein Length | 1383 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642638533 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001912410 |
Protein GI | 188575481 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0997174 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGTCTT ATTCGTTCAC CGAAAAAAAG CGTATCCGCA AGGATTTCGG TAAGCAGCGC TCGATTCTCG AAGTGCCGTT TCTGCTTGCC ATCCAGGTGG ATTCCTACCG CGAATTCCTG CAGGAAGATG TGGAGTCGAC CAAGCGCAAG GACCTCGGTC TGCACGCGGC ATTGAAGTCG GTGTTCCCGA TTTCCAGCTA CAGCGGCAAC GCTGCGCTGG AGTACGTCGG TTACAAGTTG GGTCAGCCGG TGTTCGACGA GCGCGAATGC CGTCAGCGTG GCATGAGCTA TGGCGCGCCG CTGCGCGTGA CCGTGCGCCT GGTGATCTAC GACCGCGAGT CGTCCACCAA GGCGATCAAG TACGTGAAGG AGCAGGAGGT CTATCTCGGC GAAATTCCGC TGATGACCGG CAACGGTACC TTCATCGTCA ACGGCACCGA GCGTGTGATC GTGTCGCAGC TGCATCGCTC GCCGGGCGTG TTTTTCGACC ACGACCGTGG CAAGACCCAC AGCTCGGGCA AGCTGCTGTA CAGCGCCCGC ATCATTCCGT ACCGCGGTTC CTGGTTGGAC TTCGAGTTCG ACCCGAAGGA TGCGCTGTTC ACCCGTATCG ACCGTCGCCG CAAGTTGCCG GTGTCGATCC TGCTGCGCGC GCTCGGCTAC AACAACGAAG AAATGCTGGC CGAGTTCTTC GAGATCAACA CCTTCCACAT CAATCCGGAC GAAGGCGTGC AGCTGGAGCT GGTACCGGAG CGTCTGCGTG GCGAAACGCT GAACTTCGAC CTGGCCGATG GCGATAAGGT CATCGTGGAA GCCGGTAAGC GCATCACCGC GCGTCACGTC AAGCAACTGG AAGCCGCCGG CGTTGCCGCG CTGGCCGTGC CGGACGACTA CCTGGTCGGC CGCATCCTGT CGCACGACGT GGTCGATGGC TCCACCGGCG AACTGCTGGC CAATGCCAAC GACGAGATCA GCGAAGACCA ACTGACCGCG TTCCGCAAGG CTGGCGTCGA TGCGGTCGGC ACCCTGTGGG TGAACGATCT GGATCGTGGT CCGTACCTGT CCAACACCTT GCGCATCGAT CCGACCAAGA CGCAGCTGGA AGCGCTGGTC GAAATCTACC GCATGATGCG TCCGGGCGAG CCGCCGACCA AGGAAGCCGC GCAGAACCTG TTCCACAACC TGTTCTTCAC CTTCGAGCGC TACGACCTGT CCACGGTCGG CCGCATGAAG TTCAACCGTC GCGTCGGCCG CAAGGACGTG CTGGGCGAGT CGGTGCTGTA CGACAAGAAG TATTTTGCCG AGCGTAACGA CGAAGAATCC AAGCGCCTGG TCGCCGAGCA CACCGACACC TCCGACATCC TGGAAGTGAT CAAGGTCCTG ACCGAGATCC GCAATGGTCG CGGCGTGGTC GATGACATCG ATCACCTGGG CAACCGTCGC GTGCGTTCGG TCGGCGAAAT GGCCGAGAAC GTGTTCCGCG TAGGCCTGGT CCGCGTCGAG CGTGCGGTCA AGGAGCGTCT GTCGATGGCG GAGTCGGAAG GTCTGACCCC GCAGGAATTG ATCAACGCCA AGCCGGTGGC TGCAGCGATC AAGGAATTCT TCGGCTCCTC GCAGCTGTCG CAGTTCATGG ACCAGAACAA CCCACTGTCG GAAGTGACGC ACAAGCGTCG CGTCTCCGCA CTGGGCCCGG GCGGTCTGAC CCGCGAACGC GCCGGCTTCG AAGTGCGCGA CGTGCATCCG ACCCATTATG GCCGCGTCTG CACCATCGAA ACGCCGGAAG GCCCGAACAT CGGCCTGATC AACTCGCTGG CCGTGTTCGC CCGCACCAAC CAGTACGGCT TCCTCGAGAC GCCGTACCGT AAGGTGCTGG ACGGCAAGGT CTCCGACGAC GTCGAATACC TCTCGGCGAT CGAAGAAAAC GAGTACGTGA TCGCCCAGGC GAACGCGCTG ACCGATGCAA AGAACATGCT CACCGAGCAG TTCGTGCCGT GCCGGTTCCA GGGCGAATCG CTGTTGAAAC CGCCGTCCGA AGTGCACTTC ATGGACGTTT CGCCGATGCA GACCGTTTCG GTCGCAGCGG CGCTGGTGCC GTTCCTTGAG CACGACGACG CCAACCGCGC ACTGATGGGC GCCAACATGC AGCGCCAGGC CGTGCCGACG CTGCGTTCGC AGAAGCCGCT TGTCGGTACC GGCATCGAGC GTGCGGTTGC GCGCGACTCG GGCGTGACCG TCAATGCGCT GCGTGGTGGC GTGATCGAGC AGATCGACGC CGCTCGTATC GTGGTCAAGG TCAATGAGGC AGAAATTGGC GGCGGCACCG ATGCCGGCGT GGATATCTAC AACCTGATCA AGTACACCCG CTCCAACCAG AACACCTGCA TCAACCAGCG TCCGCTGGTG AATGTGGGTG ACGTGATCGC GCGCGGCGAC GTGCTGGCCG ACGGCCCGTC CACCGACATC GGTGAACTGG CGCTGGGTCA GAACATGCTG ATCGCCTTCA TGCCGTGGAA CGGCTACAAC TTCGAAGACT CCATCCTGCT CTCCGAACGC GTGGTGGAAG AAGATCGTTA CACCACGATC CACATCGAAG AGCTGACCTG CGTTGCGCGC GACACCAAGC TGGGGCCGGA GGAAATTTCC GCAGACATCC CGAACGTGTC CGAGCAGGCG TTGAACCGTC TGGACGAGAG TGGCGTGGTG TACATTGGTG CGGAAGTACG CGCTGGCGAC ATCATGGTCG GCAAGGTCAC GCCGAAGGGC GAAAGCCAGC TGACCCCGGA AGAAAAGCTG CTGCGTGCCA TCTTCGGTGA GAAGGCGTCC GACGTGAAGG ACAGCTCGCT GCGCGTGCCC CCGGGCATGG ATGGCACCGT CATCGACGTG CAGGTCTTCA CTCGCGACGG CATCGAGAAG GACAAGCGTG CGCGTCAGAT CGAGGAAAAC GAGATTAAGC GCGTCAAGAA GGACTTCGAC GACCAGTTCC GCATCCTGGA AGCGGCCATC TACGCCCGTC TGCGCTCGCA GATCGTGGGC AAGGTCGCCA ACGGTGGCGC GAACCTGAAG AAGGGCGACT CCGTCACCGA CGCCTACCTG GACGGGCTGA AGAAGTCCGA TTGGTTCCAG CTGCGCATGA AGGACGAGGA CGCTGCCGAC GCCATCGAGC GTGCGCAGAA GCAGATCCAG GCGCACGAGA AGGAATTCGA AGCACGGTTT GCCGACAAGC GCGGCAAGAT CACCCAGGGC GACGACCTCG CGCCGGGCGT GCTGAAGATG GTCAAGGTGT TCCTGGCGGT GAAGCGCCGC ATCCAGCCGG GCGACAAGAT GGCAGGCCGC CACGGCAACA AGGGTGTGGT CTCCAACGTG GTGCCGGTGG AAGACATGCC GTACATGGCC ACCGGTGAGT CGGTCGACAT CGTGTTGAAC CCGCTCGGCG TGCCGTCGCG TATGAACATC GGCCAGATTC TGGAAGTGCA TCTGGGCTGG GCCGCCAAGG GCCTGGGTCG CAAGATCCAG CGCATGCTGG AAGCCCAGGC CGCCGTCAGC GAACTGCGCA AGTTCCTGGA CGACATCTAC AACCACGACA ACGCGATCAA TGCGCAGCGC GTGGATCTGT CGCAGTTCAG CGATGAGGAA TTGCTCAACC TGGGCAAGAA CCTGATCGAC GGCGTACCGA TGGCCACCCC GGTGTTCGAC GGCGCCAGCG AAGCGGAAAT CAAGCGCATG CTGGAACTGG CCGACCTGCC GCAGAGCGGT CAGACCCAGC TGTACGACGG TCGCACTGGC GAAGCGTTCG ATCGCAAGAC CACGGTCGGC TACATGCACT ACCTGAAGTT GAACCACTTG GTCGACGACA AGATGCATGC ACGTTCGACT GGCCCGTACT CGCTCGTCAC TCAGCAGCCG CTGGGCGGCA AGGCGCAATT CGGTGGTCAG CGCTTCGGCG AAATGGAAGT CTGGGCGCTG GAAGCCTACG GCGCTGCCTA CACCCTGCAG GAAATGCTGA CGGTGAAGTC CGACGACGTG CAGGGCCGCA ACCAGATGTA CAAGAACATC GTCGATGGTG AGCACGAGAT GGTCGCAGGA ATGCCGGAAT CCTTCAACGT GTTGGTGAAG GAAATCCGTT CGCTGGCGAT CCACATGGAA CTGGAAGAGT AA
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Protein sequence | MTSYSFTEKK RIRKDFGKQR SILEVPFLLA IQVDSYREFL QEDVESTKRK DLGLHAALKS VFPISSYSGN AALEYVGYKL GQPVFDEREC RQRGMSYGAP LRVTVRLVIY DRESSTKAIK YVKEQEVYLG EIPLMTGNGT FIVNGTERVI VSQLHRSPGV FFDHDRGKTH SSGKLLYSAR IIPYRGSWLD FEFDPKDALF TRIDRRRKLP VSILLRALGY NNEEMLAEFF EINTFHINPD EGVQLELVPE RLRGETLNFD LADGDKVIVE AGKRITARHV KQLEAAGVAA LAVPDDYLVG RILSHDVVDG STGELLANAN DEISEDQLTA FRKAGVDAVG TLWVNDLDRG PYLSNTLRID PTKTQLEALV EIYRMMRPGE PPTKEAAQNL FHNLFFTFER YDLSTVGRMK FNRRVGRKDV LGESVLYDKK YFAERNDEES KRLVAEHTDT SDILEVIKVL TEIRNGRGVV DDIDHLGNRR VRSVGEMAEN VFRVGLVRVE RAVKERLSMA ESEGLTPQEL INAKPVAAAI KEFFGSSQLS QFMDQNNPLS EVTHKRRVSA LGPGGLTRER AGFEVRDVHP THYGRVCTIE TPEGPNIGLI NSLAVFARTN QYGFLETPYR KVLDGKVSDD VEYLSAIEEN EYVIAQANAL TDAKNMLTEQ FVPCRFQGES LLKPPSEVHF MDVSPMQTVS VAAALVPFLE HDDANRALMG ANMQRQAVPT LRSQKPLVGT GIERAVARDS GVTVNALRGG VIEQIDAARI VVKVNEAEIG GGTDAGVDIY NLIKYTRSNQ NTCINQRPLV NVGDVIARGD VLADGPSTDI GELALGQNML IAFMPWNGYN FEDSILLSER VVEEDRYTTI HIEELTCVAR DTKLGPEEIS ADIPNVSEQA LNRLDESGVV YIGAEVRAGD IMVGKVTPKG ESQLTPEEKL LRAIFGEKAS DVKDSSLRVP PGMDGTVIDV QVFTRDGIEK DKRARQIEEN EIKRVKKDFD DQFRILEAAI YARLRSQIVG KVANGGANLK KGDSVTDAYL DGLKKSDWFQ LRMKDEDAAD AIERAQKQIQ AHEKEFEARF ADKRGKITQG DDLAPGVLKM VKVFLAVKRR IQPGDKMAGR HGNKGVVSNV VPVEDMPYMA TGESVDIVLN PLGVPSRMNI GQILEVHLGW AAKGLGRKIQ RMLEAQAAVS ELRKFLDDIY NHDNAINAQR VDLSQFSDEE LLNLGKNLID GVPMATPVFD GASEAEIKRM LELADLPQSG QTQLYDGRTG EAFDRKTTVG YMHYLKLNHL VDDKMHARST GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL EAYGAAYTLQ EMLTVKSDDV QGRNQMYKNI VDGEHEMVAG MPESFNVLVK EIRSLAIHME LEE
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