Gene PXO_04497 details

Gene Information

• Locus tag: PXO_04497
• Symbol: rpsD
• ID: 6304791
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 1268798
• End bp: 1269424
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 642638565
• Product: 30S ribosomal protein S4
• Protein accession: YP_001912442
• Protein GI: 188575513
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 0.777393
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTCGTT ATATCGGTCC TACCTGTAAG CTCGCGCGCC GCGAAGGCGC CGACCTTTCC 
CTCAAGAGCC CGGCGCGCGC GCTGGACTCC AAGTGCAAGC TTGAGCAGAA GCCCGGCCAG 
CACGGCGCGT CTCGCAAGGG CAAGCTCTCC GACTACGCCA CCCAACTGCG TGAAAAGCAA 
AAGGTCAAGC GTATCTACGG TCTGCTGGAA CGTCAGTTCC GCAATTACTA CAAGAAGGCC 
TCGACCAAGA AGGGCAACAC CGGCGAGAAC CTGCTGCAGT TGTTGGAAAC CCGTCTGGAC 
AACGTCTGCT ACCGCATGGG CTTTGCCGTC ACCCGTCCGG CCGCGCGCCA GCTGGTGTCG 
CACCGTTGCG TGCTGGTCAA TGGCAAGTCG GTGAATCTGG CGTCGTACCA GATCAAGGCT 
GGCGATGCGA TCACGCTGTC GGAAAAGGCG CAGAAGCAGC TCCGTGTGCA GGAAGCCCTG 
ACCGTGGCTG AGCAGCACGA CATGACGCCG TCGTGGGTTG AAGTCGATTC GAAGAAGTTC 
AGCGGCGTGT TCAAGGCCGT TCCGGATCGC GCTGACCTGC CTTCGGATAT CAACGAAGCG 
CTGATCGTCG AGTTGTATTC GAAGTAA 

 

Protein sequence

MARYIGPTCK LARREGADLS LKSPARALDS KCKLEQKPGQ HGASRKGKLS DYATQLREKQ 
KVKRIYGLLE RQFRNYYKKA STKKGNTGEN LLQLLETRLD NVCYRMGFAV TRPAARQLVS 
HRCVLVNGKS VNLASYQIKA GDAITLSEKA QKQLRVQEAL TVAEQHDMTP SWVEVDSKKF 
SGVFKAVPDR ADLPSDINEA LIVELYSK