Gene PXO_04401 details

Gene Information

• Locus tag: PXO_04401
• Symbol: ribD
• ID: 6304536
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 1026711
• End bp: 1027820
• Gene Length: 1110 bp
• Protein Length: 369 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 642638311
• Product: riboflavin biosynthesis protein RibD
• Protein accession: YP_001912193
• Protein GI: 188575264
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 0.607399
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGAGA CCGCGGCGAT CGCGAGTGCC GATGACCACC GCTGGATGGC GCAGGCGTTG 
CGCTTGGCCG AGCGCGGCGC CTACACCACC CGCCCCAATC CGATGGTGGG CTGCGTGATT 
GTGCGCGATG GCGTGTGCGT GGGCGAAGGC TTTCATCAAC GTGCGGGTGG CCCGCATGCC 
GAAGTCTTCG CGTTGCGTGC GGCCGGTGAG TTGGCGCGCG GTGCCACTGC GTATGTGACC 
CTGGAGCCAT GCGCGCATTA CGGGCGCACG CCGCCGTGTG CGTTGGCGTT GATCGAGGCA 
GGCGTAACGC GTGTGGTCGC GGCGATGGCC GATCCGTTTC CGCAGGTCAA TGGCGGTGGT 
TTTGCGTTGC TGCGCGACGC TGGAATCGAG GTGCTCAGCG GGGTGATGCA CGCGCAGGCG 
CGCACGCTCA ATCAGGGCTT TCTGTCGCGG GTGGAGCGTG GCCGGCCGTG GCTGCGGGTC 
AAACTGGGCG CCAGCCTTGA CGGGCGGACC GCGTTGGCCA GCGGCCAATC CAAATGGATC 
ACCGGAGCCG ACGCGCGTGC GGACGTGCAG CGTTGGCGTG CGCGTGCCGG CGCAATCCTC 
ACTGGTGCTG GCACGGTGTT GGCCGATGAT CCGTCGATGA CGGTGCGGCT GGGCGATGAC 
ATCGCGTGCG TGCCACCGCT GCGTGTGGTG CTGGATGCCG GCTTACGCAC GTTGGCGTGC 
AAGAACATCC GCAATGGCGA TGCGCCGACG CTGTATCTGC ATGGCGATGC TGTCGCTGCA 
ACCGCGCTGG ATGGTGCGGA ATGTGCGGCA CTGCCATTGC ACGTGGGCCG TTTCGATCTG 
TCCGCAGTGC TGGCGTTGCT GGCCGAGCGC GGCATCAATG AAGTGCATGT TGAAGCCGGC 
GCCACGCTGA GTGGTGCGCT GTTGCAGGCC GGGCTGGTGG ACGAACTGCT GGTCTACATG 
GCGCCGGTGT TGCTGGGCGA CACCGCAAGG CCCTTGCTCG CTGGCCTTGG CATCGAAACG 
ATGGCTCAGC GCTACGAATT GCAACTACGC GATGTACGTC AGCTCGGGCA GGATCTGCGT 
TTGCGTTACG CGCCATCAGC GGTGGTATGA 

 

Protein sequence

MSETAAIASA DDHRWMAQAL RLAERGAYTT RPNPMVGCVI VRDGVCVGEG FHQRAGGPHA 
EVFALRAAGE LARGATAYVT LEPCAHYGRT PPCALALIEA GVTRVVAAMA DPFPQVNGGG 
FALLRDAGIE VLSGVMHAQA RTLNQGFLSR VERGRPWLRV KLGASLDGRT ALASGQSKWI 
TGADARADVQ RWRARAGAIL TGAGTVLADD PSMTVRLGDD IACVPPLRVV LDAGLRTLAC 
KNIRNGDAPT LYLHGDAVAA TALDGAECAA LPLHVGRFDL SAVLALLAER GINEVHVEAG 
ATLSGALLQA GLVDELLVYM APVLLGDTAR PLLAGLGIET MAQRYELQLR DVRQLGQDLR 
LRYAPSAVV