| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_04304 |
|---|
| Symbol | |
|---|
| ID | 6304453 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 942254 |
|---|
| End bp | 944065 |
|---|
| Gene Length | 1812 bp |
|---|
| Protein Length | 603 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642638231 |
|---|
| Product | two-component system sensor protein |
|---|
| Protein accession | YP_001912113 |
|---|
| Protein GI | 188575184 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACAA CGGTCCAAGC AGACAAATGG GATCGCTGGC GCCTGCCTCT TTTGGCGGTT
GCCGTCTTCC TGATTGTGGT GGTGCCATCG TTGCTGCTGC AGCAGTTGGC ACGCAATGCC
AACCGGGCTG CGGTGTGGGT CTCGCACAGC CAGCAAGTGC AGGGGACCGC GCAGCGCCTG
GAAGCGGCGA TGCGCGATAC CGAATCGGCG GCGTTGATGC GCGCGCACGG TGTGGAGCGC
GAGGCGCTGC ATGAGCGCAT GCGCCGCGGG CGGAGCGAGT CGCTGGCTGC AGTGCAGCGG
TTGATCGTAT TGACCAGGGA CAACCCCGCG CAGTTGGTGC GCATCGGACG CATCCAAAGC
ACCATCGAAC GGCGTTTGCT GCTGGCCGAG CGGATTGCGG TGACCACTTC GCCGGAGCAG
ATCCGCTTCC TGATCAACGA CATGACCGTG AACAACCCGA TCCGTGTGCT GATGGACGAC
CTGCAAAGCG CCGAAGGCCG TTTGTTGGCG CTGCGCAATG CGCGCGCCGA GACCGAACGC
ATGCATTACG CGCTGCTGGG CTGGGCGGCG TTGGCGGTGC AGCTGCTGTT GCTCGGCACG
GTGACTTGGC TGATGCAACG GCAGATCCGG CGCCGATTGG TGGCCGAGCA GGAATACCTG
CGCGCCAACG GCCGCGCCAG CTCGGTGCTG CAGACCGTAC GTGAGCCCAT CGTGCTGCTG
GATGCCGACC AACGCATCTT GTTGCACAAC CCCGCCTTCG CCGAGCTGTA TGGTCTGGAA
GAGCGCGGCA ACGAATTGAT GGCGCTGGAG GATGTGGGCG AAGGCGTGTG GCGCGATGCC
CAGATCCATC AGCGGCTGGC CGACGTGCTG CTGCGTGGCC GTGAACTGTG GGATTACGAA
CACGAGCAAC GCGGCGCCGA TGGCGTGCTA CGCACCATGT TGATCAACGC GCGCCGCATG
CCACTGCCCG ATACCACCGA CGAAGACGTG GTGCTGATGA CGGTGAGCGA CATCAGCCTG
CAAAAGACCG CGCAGATGCG CATCCAGGAG CTCAACCGGC AGATGGAAGG CAAGGTGGAG
CAGGTGTCTG AGGTCAACCG CGAGTTGGAA GCCTTCAGCT ATTCGGTCTC GCACGATCTG
CGCGCGCCGT TGCGGCATGT GGCCGGATTC TCCGACAAGC TGGCCCGCCA TCTGGGCGAT
GCGGCCGACG AGAAATCGCG CCACTACATG GAAGTGATCA GCAGCTCGGC GCGGCGCATG
GCCTCGCTGA TCGACGACCT GCTGGTGTAT TCGCGCCTGG GCCGCGGCGC GCTGCGCCTG
CAGTCGGTGG ACATGCAATC GCTGGTGGCC GAAACGCGCG CGATTCTGGA TTCCAACGTG
CAGAGCGAAA ACACCGGCCA TCGCGTGGAG TGGCATATCG CGCCGCTACC GGTGCTGGTG
GCCGACGAAA ACATGATGCG CCAGCTGTGG ATGAACCTGC TCGGCAATGC CGTCAAGTAC
AGCGCCAAGC GCGAGGTGGC CAAGGTCGAG GTCACCTACA CGCCGATGGC CGACGGCGGC
CATCAGTTCA GCGTGCGCGA CAACGGCGCC GGTTTCGATA TGGAATACAG CGCCAAATTG
TTCGGCGTTT TCCAACGGTT GCACAAGGCC AGCGAATACG CTGGTACCGG CATCGGGCTG
GCCAGCGTGC GGCGCGTGTT GACGCGCCAC GGCGGCCGGG TCTGGGCCGA AGGCCTCGTC
GACGAAGGCG CCACGTTTTA TTTCGTGTTG CCCCCTGCGC TTGAAGCGCC CAACCAAGAG
TTCACTGTAT GA
|
|---|
| Protein sequence | MQTTVQADKW DRWRLPLLAV AVFLIVVVPS LLLQQLARNA NRAAVWVSHS QQVQGTAQRL
EAAMRDTESA ALMRAHGVER EALHERMRRG RSESLAAVQR LIVLTRDNPA QLVRIGRIQS
TIERRLLLAE RIAVTTSPEQ IRFLINDMTV NNPIRVLMDD LQSAEGRLLA LRNARAETER
MHYALLGWAA LAVQLLLLGT VTWLMQRQIR RRLVAEQEYL RANGRASSVL QTVREPIVLL
DADQRILLHN PAFAELYGLE ERGNELMALE DVGEGVWRDA QIHQRLADVL LRGRELWDYE
HEQRGADGVL RTMLINARRM PLPDTTDEDV VLMTVSDISL QKTAQMRIQE LNRQMEGKVE
QVSEVNRELE AFSYSVSHDL RAPLRHVAGF SDKLARHLGD AADEKSRHYM EVISSSARRM
ASLIDDLLVY SRLGRGALRL QSVDMQSLVA ETRAILDSNV QSENTGHRVE WHIAPLPVLV
ADENMMRQLW MNLLGNAVKY SAKREVAKVE VTYTPMADGG HQFSVRDNGA GFDMEYSAKL
FGVFQRLHKA SEYAGTGIGL ASVRRVLTRH GGRVWAEGLV DEGATFYFVL PPALEAPNQE
FTV
|
|---|
| |