| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_04216 |
|---|
| Symbol | hppD |
|---|
| ID | 6304305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 792117 |
|---|
| End bp | 793232 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642638083 |
|---|
| Product | 4-hydroxyphenylpyruvate dioxygenase |
|---|
| Protein accession | YP_001911965 |
|---|
| Protein GI | 188575036 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
|---|
| TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAC TACCGAACAC CACTGCAACC CGCCCGGATC CGGGCATGCA GGTCACCACC
TTCGACAATC CGATGGGCAT CGACGGCTTC GAGTTCGTCG AATTCGCCGC ACCGGCCGGC
CAGGCAGTGA AGTTGCACGA CTATTTCCGC AAGATGGGCT TCAGCGCGGT GCTGCGTCAC
CGTAGTCGCC TCATTACCGT CTATCGCCAG GGCGGGGTCA ACTTCCTGCT CAACGAAGAC
CCCGATTCGT TCGCCGCCGA CTTCGCCGCT GCGCATGGTC CGTGCGCTTG CGGCTTCGCG
ATTCGCTTCC GCACCCCGGC CGAGACCGTG CTGCAGACCG TGCTGGGCAA CGGCGGCGAA
GCGGTGCAGG ACAAGGCCGA CACCCGCGCG GTGCCGGCGC CGGTGGTCAA GGGCATCGGC
GATTGCATGC TGCATCTGGT GGACCGCTAC GGCGACGCCG GCAGCATCTA CGACGCTGAT
TTCGAGCCCA TCGACGGTGC CGACCAGCAT CCGACCGGCT TCGGGCTGAC CTTCATCGAC
CACCTCACCC ATAACCTGTA TTTCGGCAAC ATGCAGCGCT GGTCGGATTA CTACGAGCGC
CTGTTCAACT TCCGCGAGAT TCGCTACTTC GACATCAAGG GCGCCAAGAC CGGCCTGGTG
TCCAAGGCGA TGACTGCGCC GGACGGCATC GTGCGGATTC CGCTCAACGA ATCGTCCGAC
CCCAAGAGCC AGATCAACGA GTATCTGGAC GCCTACCAGG GTGAAGGTAT CCAGCACATC
GCCTGCTTCA CCGAGGACAT CTACACCAGC GTGGAAAAAA TGCGCGCCGC TGGCGTGAGC
TTTCTGGACA CGCCGGACAC GTATTTCGAT GTGGTGGACC TGCGCATTCC CGACCACGGC
GAAGATGTCG AACGCCTGCG TCGCAACAAG ATCCTGATCG ACGCCGACCC GGATACCAAA
CAGCGCAAGC TGCTGCAGAT CTTCACCACC AACTGCATCG GCCCGATCTT CTTCGAGATC
ATCCAGCGCA AGGGTAATGA AGGTTTCGGC GAAGGCAATT TCCAGGCGCT GTTCGAAAGC
ATCGAGCGCG ATCAGATCAA GCGTGGGGTG CTTTGA
|
|---|
| Protein sequence | MSALPNTTAT RPDPGMQVTT FDNPMGIDGF EFVEFAAPAG QAVKLHDYFR KMGFSAVLRH
RSRLITVYRQ GGVNFLLNED PDSFAADFAA AHGPCACGFA IRFRTPAETV LQTVLGNGGE
AVQDKADTRA VPAPVVKGIG DCMLHLVDRY GDAGSIYDAD FEPIDGADQH PTGFGLTFID
HLTHNLYFGN MQRWSDYYER LFNFREIRYF DIKGAKTGLV SKAMTAPDGI VRIPLNESSD
PKSQINEYLD AYQGEGIQHI ACFTEDIYTS VEKMRAAGVS FLDTPDTYFD VVDLRIPDHG
EDVERLRRNK ILIDADPDTK QRKLLQIFTT NCIGPIFFEI IQRKGNEGFG EGNFQALFES
IERDQIKRGV L
|
|---|
| |