| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_04155 |
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| Symbol | |
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| ID | 6304367 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 855458 |
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| End bp | 858082 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642638145 |
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| Product | Putative signal protein with GAF,PAS(PAC) and GGDEF domains |
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| Protein accession | YP_001912027 |
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| Protein GI | 188575098 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2203] FOG: GAF domain
[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.581833 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGTCC TGTTGCCGCC CGTGCCGATC CCCGTCGACG ATGCCTTGCG CGTGGACGCG
GTGCGCCGGC TCGGGGTACT GGACACCGAG GCCGAGGCCG AATTCGACGA CATCGTCTGG
CTGGCCGCGC ACGTCACCGG CGCGCCGGTG GCACTGGTGT CGCTGCTGGA TGCCGACCGC
CAGTGGTTCA AGGCGCGTTG CGGCAGCGAC CTGGAAGGCA CTCCGCGCAG CGCCTCGTTT
TGCTCCCACG CGATCATGGG CACCGAGTTG ATGGAAGTGC CCGATGCCGA AGCCGACCCG
CGCTTCGTCA ACAACCCGTT GGTGGTCGGC GCCCCCGGCG TGCGCTCGTA CGTGGGGGTA
CCGTTGATCG GGCGCGAAGG CTATGCCTAC GGAACCTTGT GCACGCTCAG CACCAGGCCG
CGCGTGCTCG ACGAACAGCA GAAGCAGGCG TTGATCCGCC TTGCGCGCCA GGCTGCCAAA
CAGTTGGAAG CGCGCCGCGA CCGCCTGGAA GCGCAGGCGC AGCGGCAGAC CTTGAGCATG
TTGCTGGAAG CCATGCCCGA CGGCGTGGTG GCCTGCGGCA CCGACGGATT GCTGCGCGAG
TTCAATCACG CCGCCCGGCA ATGGCATGGC ACCGATCCGC GCCTGTTGCC ACCGGAGCAA
TGGGCGTTGC ATTTTGATCT GTACACGGCC GACGGCACTC ACCTGCTGCC GACCGAAGCG
ATTCCGCTGC TGCGCGCCTG GCGCGGCGAA CACGTGCGCA ATGCCGAACT GGTGATCCGT
GCCACCGGCC AGCCGCCGCG CAGCGTGCTG TGCAACGCAG ACCCGGTGGT CGGCGACAAC
GGCACGGCCT TGGGCGCGGT CTGCGTGATG CACGACATCA CCCAGCTCAA GGATGCGTCG
GCGGCACTGG CCGGCGAACG CGCGCGGCTG CAGGCACTGG TGGACGCGTC GCAAGATGTG
GCCATCATGG CGTTCGACCC GCAGGGACGT CTGGAACTGT TCAATCCCGG TGCCGAGCGC
CTGCTCGGTT ACAGTGCCGA CGAGGTGCTG GGCACCTGTC CGGCGCAGTT CCATCTACCG
GCCGAGCTTG AGCGCCACAT GGCGACGCTG GCAGTGGCGC CATTCTCATA CGCGACGCTG
GCTGCCGCCG CCGCTGGCGA TGTGCTGGCC GAGGAACTCT GGACACTGGT ACGCAAGGAC
GGCGATCTGC GGCGCGTGCG CCTGTGTTTC AACGTCATCC ACGATGCGCA GCAGGGCCTG
GCCGGATATC TGGCAATGGC CATCGACGTC ACTGCCGAAT TGCAGGCGCA AGCGGCCGCG
CAGCTGGCCG CCGAGCGCTT CACCGGTGCA TTCGAGACAG CGCCGCAAGG CATGGCGATC
GTGTCGCTGG AAGGTGAGTG GCGCGACGTC AATCCGGCGT TGTGCGGCAT CCTGGGCTAT
GCGCGCGAGC AATTGTTGCG CACGACTTTC CAGCAGATTA CCCATCCCGA CGATCTGGAG
ATGGACCTGC AACTCGTGCA GGATCTCGTC GACGGAAAAC GCGCCAGTTA CAGCCTGGCC
AAGCGCTACA TCAGCCACCA GGGCGCGGTG ATCTGGGCGC AGTTGTCGGT ATCGCTGGTG
CGCGACAGCA GCGGTGCGCC GGTGCATTTC GTTTCGCAGA TTCAAGACGT GACCGAGCGC
CACGTGGCGG CCGAACGGCT GGCCGAAAGC GAGGCGCGTC TGCGCGCGAT CAGCGATGCC
ACGCCCACGT TGGTTGCCCA GTTCGATGCC GGGCAGCGCT ACCTGTTCGC CAATAAAGCG
CATCGCGCCT GGCTCGGTAT GGAACCTGCC AGCCTGGTCG GTCGCCATAT CACCCACGTG
TTGGGCGAAG ACCTCAGCGC CGCCGCGCGC GCTGCATTGG TACAGGCGGT GGCCGGGCAG
CGCGCCAGCT TCGAACATGT CTTGCATGGC GGCACCAACC CGCGCGATGT GGAAGTGAGC
CTGGTGCCGG AAATGCACGG CACTGCGACG CAGGCGCAGG GTTTCTTCCT GATGGCGCAC
GATGTCACTA CGCACAAGAC ACTGCACCGT TTGATGCACC AACGCGCTAC CCGTGATGCG
TTGACCGGAC TGCCGAACCG GCATGCCTGG TCCGAAGCGC TGCAAGTGGC AATGACACAG
GCGCATCAAC AGCAGCTCGC GGTGGCGGTG ATGTTCCTGG ATTTGGATGG CTTCAAACGC
ATCAACGACA TCTACAGCCA CCGTGCCGGC GATGCAGTGT TGGTGGCGTT CGGCCATTGC
CTGCAGCGCG CGGCTGGTGA GCGCTATTTG GTGGCGCGCT TGGCCGGCGA CGAATTCGTG
GTGTTGCTGG ATGCGCTGCA GGATCCGCAA GCCGAATGCG CCACGATGGC AGATCGCATC
CGCGCGCTTG CGGCGGAAGG CGCCATGTTC GGCGATCAGC ATCTACCGAT CCAGCCCAGC
ATCGGTGTGG CCTGGCAACA CGGCGCACAG GCCGAAGCGG CCAGCTTGAT GCATGCCGCT
GACGAGGCGA TGTATGCGGC CAAACGCGCA CGGCGGCCAG CTGAGCAGGC CGTTGCGGCA
GTAAGCGTTG TGGGTTGCTG GTGCAAGCCA GTGCGTTGCT GCTGA
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| Protein sequence | MTVLLPPVPI PVDDALRVDA VRRLGVLDTE AEAEFDDIVW LAAHVTGAPV ALVSLLDADR
QWFKARCGSD LEGTPRSASF CSHAIMGTEL MEVPDAEADP RFVNNPLVVG APGVRSYVGV
PLIGREGYAY GTLCTLSTRP RVLDEQQKQA LIRLARQAAK QLEARRDRLE AQAQRQTLSM
LLEAMPDGVV ACGTDGLLRE FNHAARQWHG TDPRLLPPEQ WALHFDLYTA DGTHLLPTEA
IPLLRAWRGE HVRNAELVIR ATGQPPRSVL CNADPVVGDN GTALGAVCVM HDITQLKDAS
AALAGERARL QALVDASQDV AIMAFDPQGR LELFNPGAER LLGYSADEVL GTCPAQFHLP
AELERHMATL AVAPFSYATL AAAAAGDVLA EELWTLVRKD GDLRRVRLCF NVIHDAQQGL
AGYLAMAIDV TAELQAQAAA QLAAERFTGA FETAPQGMAI VSLEGEWRDV NPALCGILGY
AREQLLRTTF QQITHPDDLE MDLQLVQDLV DGKRASYSLA KRYISHQGAV IWAQLSVSLV
RDSSGAPVHF VSQIQDVTER HVAAERLAES EARLRAISDA TPTLVAQFDA GQRYLFANKA
HRAWLGMEPA SLVGRHITHV LGEDLSAAAR AALVQAVAGQ RASFEHVLHG GTNPRDVEVS
LVPEMHGTAT QAQGFFLMAH DVTTHKTLHR LMHQRATRDA LTGLPNRHAW SEALQVAMTQ
AHQQQLAVAV MFLDLDGFKR INDIYSHRAG DAVLVAFGHC LQRAAGERYL VARLAGDEFV
VLLDALQDPQ AECATMADRI RALAAEGAMF GDQHLPIQPS IGVAWQHGAQ AEAASLMHAA
DEAMYAAKRA RRPAEQAVAA VSVVGCWCKP VRCC
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