Gene PXO_04055 details

Gene Information

• Locus tag: PXO_04055
• Symbol: def
• ID: 6304198
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 701275
• End bp: 701733
• Gene Length: 459 bp
• Protein Length: 152 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 642637979
• Product: peptide deformylase
• Protein accession: YP_001911862
• Protein GI: 188574933
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 41
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCCGGTCG ACTCTGCCGA GCTTGCCAGC CAGGCGTTCC AGGCGCTGCT GGATGACATG 
TTCCAGACCA TGTACGAGGC GCCGGGCATC GGCCTGGCTG CCAGTCAGGT GGACGTGCAC 
AAGCGTTTCA TGGTCATCGA CGTCAGCGAC GAGAAGAATC TGCCGCAGGT GTTCGTCAAC 
CCGGAAATCG TGAGCAAGCA GGGCGAGCAG CTGTGTCAGG AAGGCTGCCT GTCGGTACCC 
GGCATTTATG CCGATGTCAG CCGCGCCGAT GCGATCACGG TGCGCTATCT CGACCGCCAG 
GGCCAGGCGC AGGAACTGCA TGCCGACGGG CTGCTGGCCG TGTGCATCCA GCACGAAATG 
GACCACCTGG ACGGCAAGCT GTTCGTAGAT TATCTCTCGC CGCTCAAGCG CGAAATGGTG 
CGCAAGAAGC TGGCCAAACA GCGCAAGCAT GTGGCTTGA 

 

Protein sequence

MPVDSAELAS QAFQALLDDM FQTMYEAPGI GLAASQVDVH KRFMVIDVSD EKNLPQVFVN 
PEIVSKQGEQ LCQEGCLSVP GIYADVSRAD AITVRYLDRQ GQAQELHADG LLAVCIQHEM 
DHLDGKLFVD YLSPLKREMV RKKLAKQRKH VA