| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_03981 |
|---|
| Symbol | |
|---|
| ID | 6304122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 625353 |
|---|
| End bp | 628601 |
|---|
| Gene Length | 3249 bp |
|---|
| Protein Length | 1082 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642637905 |
|---|
| Product | acriflavin resistance protein D |
|---|
| Protein accession | YP_001911790 |
|---|
| Protein GI | 188574861 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGGCTTTT CGACCATCTT CATCCGCCGC CCGATCGCCA CTTCGTTGTT GATGGCCGGT
GTCCTGCTGT TAGGCATCCT CGGTTACCGT CAACTGCCGG TCTCCGCATT GCCGGAAATC
GACGCCCCCA GCCTGGTCGT CACCACCCAG TACCCCGGCG CCAATGCGAC CACCATGGCC
TCGCTGGTGA CCACACCGCT GGAACGCCAG TTCGGGCAGA TCTCCGGCCT GAAGATGATG
ACCTCCGATT CGTCGGCGGG CCTGTCCACG ATCATTCTGC AGTTCTCGAT GGAGCGCGAT
ATCAATATCG CCTCGCAGGA CGTGCAGGCG GCGATCCGCC AGGCCACCCT GCCTTCCTCG
CTGCCGTACC AGCCGGTCTA TAACCGAGTC AATCCGGCCG ACGCGGCGAT TCTCACGCTC
AAGCTCACCT CCGATTCGCT GCCGCTGCGC GAGGTCAACC GCTATGCCGA TGCGATCCTG
GCCCAGCGTC TGTCGCAGGT GCCGGGCGTG GGCCTAGTCT CGATCGCCGG CAACGTCCGC
CCTGCGGTGC GCATCCAGGT CAATCCTGCG CAGCTGTCGA ACATGGGCCT GACCATGGAG
TCGCTGCGCA GCGCGCTGAC GCAGACCAAC GTCAGCGCGC CGAAGGGCTC GCTCAACGGC
AAGACCCAGT CCTACAGCAT CGGCACCAAC GACCAGCTCA CCGATGCGGC GGAGTATCGC
CAAACCATCA TCAGCTACAA GGATGGCCGC CCGGTGCGGC TGGCGGATGT GGCCAACGTG
GTCGATGGGG TGGAAAACGA CCAGCTGGCC GCCTGGGCCG ATAACAAGCC GGCGGTGTTG
CTGGAGATCC GCCGCCAGCC GAGCGCCAAC ATCGTGCAGA CGGTGGAGCA GATCCGCAGC
ATCCTGCCGC AGCTGCAGTC GGTATTGCCG GCCGATGTGC ATCTGGAGGT GCTCTCCGAC
CGCACCGAAA CCATCCGCGC CTCGGTGCAC GAGGTGAAGT TCACCCTGGT GCTGACGATT
GCGCTCGTGG TGGCGGTGAT CTTCGTGTTC CTGCGCCGGC TGTGGGCCAC CATCATTCCC
TCGGTGGCGG TACCGCTGTC GCTGGCCGGC ACCTTCGCGG TAATGGCCTT CGCGGGCATG
TCGCTGGACA ACTTGTCGCT GATGGCGCTG GTGGTGGCCA CCGGGTTCGT GGTCGACGAT
GCGATCGTGA TGATCGAGAA CATCGTGCGC TACATCGAGC AGGGCAAGAG CGGGCCGGAA
GCGGCCGAGA TCGGCGCTAA ACAGATCGGT TTCACCGTGT TGTCGCTGAC CGTCTCGCTG
GTGGCGGTGT TCCTGCCGCT GCTGCTGATG CCGGGCGTGA CCGGGCGACT CTTCCACGAG
TTTGCGTGGG TGCTGTCGAT TGCGGTGGTG ACCTCGATGC TGGTGTCGCT GACGCTGACG
CCGATGATGT GCGCCTACCT GCTCAAGCCC GATGCCTTGC CTGAGGGCGA AGACGCGCAC
GAGCGCGCAA CCGCCGCCGG CAAGCGCAAT CTGTGGACCC GCACCGTGGG CATCTACGAG
CGCAGCCTGG ACTGGGTGCT TGCGCATCAA CCGCTGACTC TGGCGGTGGC GATCGGTGCG
GTCGCGTTGA CGGTAGTGCT GTATGTCGCA ATCCCCAAGG GCTTGTTGCC CGAACAGGAC
ACCGGCCTGA TCACCGGCGT GGTGCAGGCC GACCAGAACG TGGCGTTCCC GCAGATGGAA
CAACGCACCC AGGCGGTGGC CGCTGCCTTG CAGAAAGACC CGGCGGTGAC CGGCGTCGCG
GCCTTCATCG GCGCCGGCAC CATGAACCCC ACCCTCAACC AGGGCCAGCT GTCGATCGTG
TTGAAGACGC GCAGCGACCG CGACGGCCTG GACGAGGTGC TGCCGCGCCT GCAGAAAGCC
GTGGCCGGCA TTCCGGGCGT GGCCTTGTTC CTCAAGCCGG TGCAGGATGT CACCCTGGAC
ACGCGCGTGG CCGCGACCGA ATACCAGTAT TCGATCTCGG ACGTGGACAG CAGCGAGCTG
GCGACCTGGG CCGGGCGCAT GACCGAGGCG ATGCGCAAAC TGCCCGAGCT TGCGGATGTG
GACAACAACC TGGCCAACCA GGGGCGTGCG CTGGAATTGA GCATCGACCG CGACAAGGCC
AGCATGCTCG GCGTGCCGAT GCAGACCATC GACGACACGC TGTACGACGC GTTCGGCCAG
CGCCAGATCT CCACCATCTT CACCGAACTC AATCAGTACC GCGTGGTGCT GGACGTAGCG
CCGGAATTCC GCAGCAGCAC GGCACTGATG AACCAGCTGG CCGTGGCCAG CAACGGCAGC
GGCGCGCTCA CCGGCACCAA CGCCACCAGC TTCGGCCAGG TGACCTCGTC CAACTCGTCC
ACGGCCACCG GCATGGGCGC GCAGAACACC GGCATCGTGG TCGGTGCGGC CAGCATCATT
CCGCTGGCCG CGCTGGCCGA AGCCAAGGTC ACCAATACAC CGTTGGTGGT GAGCCACCAG
CAGCAGCTGC CGGCAGTCAC GATTTCGTTC AATCTGGCGC CAGGCCATTC GCTGTCGCAG
GCCGTGGCGG CGATCGAAAA AGCACGCCAG GAGCTCAAGA TCCCGACCCA GGTGCATGCG
CAATTCGTCG GCAAGGCCGC GGAATTCACC GGCAGCCAGA CCGATATCAT CTGGCTGCTG
TTGGCATCGA TCGTGGTGAT CTACATCGTG CTGGGCGTGT TGTACGAAAG CTATATCCAC
CCGCTGACGA TCATCTCCAC GCTGCCGCCA GCCGGTGTCG GTGCGTTGCT GGCCTTGATG
ATGTGCGGGC TAAGCCTGTC GGTGGACGGC ATCGTCGGCA TCGTGCTGCT GATCGGCATC
GTCAAGAAGA ACGCCATCAT GATGATCGAC TTCGCCATCG ACGCACGCCG CGAAGGAGCC
AACGCGCATG ATGCGATCCG GCGCGCCTGC CTGCTGCGCT TCCGTCCGAT CATGATGACC
ACCGCTGCCG CCATGCTGGG CGCATTGCCG CTGGCGTTGG GGACCGGCAT CGGCTCGGAA
CTGCGTCGCC CGTTGGGCAT CGCCATTGTC GGTGGCTTGC TGCTCTCGCA GTTGGTGACG
CTGTACACCA CTCCGGTGAT CTATCTGTAC ATGGAACGCG GCGGCGAGCG GCTGCGTGCC
TGGCGTGCAC AGCGTGCGGC GCGCCGTGAC GGCATCACTC CGGCATCCAC ATCGGAGCGC
TCGGCATGA
|
|---|
| Protein sequence | MGFSTIFIRR PIATSLLMAG VLLLGILGYR QLPVSALPEI DAPSLVVTTQ YPGANATTMA
SLVTTPLERQ FGQISGLKMM TSDSSAGLST IILQFSMERD INIASQDVQA AIRQATLPSS
LPYQPVYNRV NPADAAILTL KLTSDSLPLR EVNRYADAIL AQRLSQVPGV GLVSIAGNVR
PAVRIQVNPA QLSNMGLTME SLRSALTQTN VSAPKGSLNG KTQSYSIGTN DQLTDAAEYR
QTIISYKDGR PVRLADVANV VDGVENDQLA AWADNKPAVL LEIRRQPSAN IVQTVEQIRS
ILPQLQSVLP ADVHLEVLSD RTETIRASVH EVKFTLVLTI ALVVAVIFVF LRRLWATIIP
SVAVPLSLAG TFAVMAFAGM SLDNLSLMAL VVATGFVVDD AIVMIENIVR YIEQGKSGPE
AAEIGAKQIG FTVLSLTVSL VAVFLPLLLM PGVTGRLFHE FAWVLSIAVV TSMLVSLTLT
PMMCAYLLKP DALPEGEDAH ERATAAGKRN LWTRTVGIYE RSLDWVLAHQ PLTLAVAIGA
VALTVVLYVA IPKGLLPEQD TGLITGVVQA DQNVAFPQME QRTQAVAAAL QKDPAVTGVA
AFIGAGTMNP TLNQGQLSIV LKTRSDRDGL DEVLPRLQKA VAGIPGVALF LKPVQDVTLD
TRVAATEYQY SISDVDSSEL ATWAGRMTEA MRKLPELADV DNNLANQGRA LELSIDRDKA
SMLGVPMQTI DDTLYDAFGQ RQISTIFTEL NQYRVVLDVA PEFRSSTALM NQLAVASNGS
GALTGTNATS FGQVTSSNSS TATGMGAQNT GIVVGAASII PLAALAEAKV TNTPLVVSHQ
QQLPAVTISF NLAPGHSLSQ AVAAIEKARQ ELKIPTQVHA QFVGKAAEFT GSQTDIIWLL
LASIVVIYIV LGVLYESYIH PLTIISTLPP AGVGALLALM MCGLSLSVDG IVGIVLLIGI
VKKNAIMMID FAIDARREGA NAHDAIRRAC LLRFRPIMMT TAAAMLGALP LALGTGIGSE
LRRPLGIAIV GGLLLSQLVT LYTTPVIYLY MERGGERLRA WRAQRAARRD GITPASTSER
SA
|
|---|
| |