| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_03612 |
|---|
| Symbol | |
|---|
| ID | 6303770 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | - |
|---|
| Start bp | 252554 |
|---|
| End bp | 255586 |
|---|
| Gene Length | 3033 bp |
|---|
| Protein Length | 1010 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642637560 |
|---|
| Product | TonB-dependent outer membrane receptor |
|---|
| Protein accession | YP_001911445 |
|---|
| Protein GI | 188574516 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAATC ACCGCACCGT CTCCACCCTG CCGCCGCGTA GCCTGTTGTA CTGCACCCTG
GCCGCTTCGT TGTTAGCCGC CAACCCGGCC ATGGCCCAGT CCAGCAACGC CACGTTGCGC
GGCCAGGTTG CTTCCGCGCA GAGCGGCAGC GAAGTCGTCG TCACCAACAT CGCCACCGGC
TCGGTGCGAC GTGCGCCGGT CAATGCGAAC GGCAACTACA CCATCGTCGG TTTGCAGCCG
GGCACCTACA AGGTCGAATC CAACGGCATC AGCCGCACGG TGACCCTGTC GGTGGCCTCC
AGCGCCACCG TCGATCTAGG CAACGAGACG GCTGCTGCGC CCGCCGGCGA TGCAACGACG
CTGGACACGG TGACGGTCAA CGCGCCGATG ATGCGCGAGG TCAAGACGTC GGAAGTAGGT
AACACGGTGT CGCTGCGGCA GATCCAGCAA TTGCCGCAGG CCACGCGCAA CTTCCTCGAG
TTTGCAGACA CGGTTCCCGG CATGGTGTTC ACCATCGACC AGGACGGCAA CACCAAGCTG
CGTGCCGGTG CATCCAACGC CAGTTCCAGC AATCTGTATA TCGACGGCGT GAGCCAGAAG
AGCTACGTCT CTGGGGGCGG TATTGCCGGC CAGAACGAAA CGCAGGGCAA CCCGTTCCCG
CAGCTTGCCA TCGGCGAGTA CAAGGTCATC ACCTCCAACT ACAAAGCCGA ATACGGCCAG
ATCAGCGGCG CGGCGATCAC TGCTGCCACC AAGTCCGGTA CCAACCAATT CCACGGCGAG
GCGTTTTACC GCTTCACCAA CCAGGACTTG CGTAAGGAAC GTCCGGACGA AGAGAACGGC
AAGGTCGACT CGCAAACCAA GGAATACGGG CTTGCCATCG GCGGCCCGCT GATCCAGGAC
CGCATGCATT TCTTCTTCGC CTATGAAGGC AAGGACAATG TGGCGCCGAA GAGCGTGCAG
CCCAGTGCCG AAGCCTCGCC GTTCGTCGGC TTGTTGCCTT CGAACCTGCG CGATCAGTTC
GGTGCGTCCA ACATGCCGTT CACCGAAGAC CTGTACTTCG GCAAGATCGA CGTCGAGCCC
ACCGATAACG ATCGCATCGA ACTGGCAACG CAATACCGCG ACGAAACCCA GGTCAGTAAC
GTCGGCGGCC AGAACGCACC GGATCGCGCG GTGGACAAGA TCAACAAGGA CAAGCGCACC
AGCCTGCGCT GGCAGCACAG TGCCGACAGC TGGTTCAACG AAGCCATCAT CACCACCGAG
GATTCGAGCA ATGTGCCGAC GCCGCGTGGC ACTGGCAACG GGTCCATCTA CACCTACGTC
GACCGCACCG AAGCCGATCC GCGCCAGTGG GTGTTCCTCA ACACTGGAGC GGCCAGCGGC
GAAGATTTCA AATTGCGTAG CCAGAAGGGC TGGTCGTTCC AGAACGATCT GACCTTCAAC
GCGCTGGAGT GGCATGGCGA ACACACCATC AAGACGGGGG TGACCTACCG CGACATCAAG
CTGACCTCGC GCGAGTCCAG CTCGCTCAAC CCGCAGTTAA GTTATGAGGT CAGCCAGAAC
GGTATTGCGC CCGTGCCATT CCAAGTGCGC TACATCCGTG CGTTCGATAA TCCGGGCCAG
GTGCCGGTGG TGGAATCGCC GTCCAAGCAA TATGGCATCT ACCTGCAGGA CGACTGGGCG
GTGAACGACA AGTTGATGCT CAACATCGGC ATGCGTTACG ACTACGAAGA CACGCAGGCC
TACACCGACT TCGTGACCTC GCAGCCGTTT ATCAATGCGC TGTATTCCGA CGATCCGGAC
AACCCGGGCC AGCCGTGGGC GAACCGCTTG GTGCCCAGCG GCATCAACGT GGCCGATTAC
ATCAGCACCG GCAACAACCG CAAGAACTTC AAGGATGCCT GGGCGCCGCG CTTCGGCTTC
TCGTATGACT TCTTCGGAGA CGAAAGTGCA GTGCTGCATG GCGGTGCCGG CCGCTCCTAC
GATCGCAACC TGTTCGAGCA GCTCGCGCTG GAATCGGTCA AGGCGGCGTT GTCGCCGGTA
GTGGTGTACT TCAGCGATGC CGCCAGCCGG CAGCCCTGCT TCCGCGATGA CCGCGTATGC
ACAGCGTGGA ACCCGGGGTA TCTCAACGGT ATCGATCAGC TCAATACCAT CCCGGGCACC
AACGACAGCT CCGAGCTTTT CATGTTCAAC AACAAGCTCA AGACGCCGTA CAGCGATCAG
TACAGCATCG GCATCAGCAA CCAGGTGGGC GACTGGCTGA CCGACGTGAC CTTCCAGCGC
GTGCTGGCCT ACGATGGCCT GGTGATGAGC CTGGTGAATC GTTATCCGAA CGGCGCCTAC
TTCGATTCCA CTGGCAGCGT GCCGTGGGGC GAGCCGGTGC CGGGCTATCG CAATACGATC
CTGGGCTACA ACGGCCTGGA ACAACGCAGC AGCCAGTTCC TGTTGTCGGC CGAAAAACCG
TACACCAAGG AATCGGGCTG GGGCTTGAAC CTGTCCTACA CCCACACCAG CGCGCGCCAG
AACCGCACCA TCGACGAACC GTTTGCGTTC GACAAGGCGA CCATTCGCGA CTATCCGTTC
GTGAAGTCGG ATGCCGTGGC GGCACATCGG TTTGTGGCGT CCGGCTCGAT CGATGGTCCG
TGGGGCGTGA CCTTCGGCGC CAAGCTGATA CTGGCAACGC CGGAGCCGAT CAACACGATC
GCCTGCTATG GCTTCACCGA TCCGGATGGA GGTACCTGTC AGGCCGTCGG CGTGACGCCG
CCGGGCAATG GCAAGTTCCT GGTGGGCGGC AAGATCTGGG GGTATCGCAC CGTCGATCTG
CAGGCGAACA AGGAGTTCAC GGTGGTCGGC GACTTCAAGC TCAACGCACG TATCAACGTG
CTGAACGCCT TCAATTTCAA GAACTACACG CAGTACCAGT ACAACAGCTT CGGTAGCGAC
GGTCGCCTGC AGCCTGATAT CACCGTGGTC GACAACGGCG AAATCAGCTA CGTGCCGCGC
AGCGTCGTGC TGGAGATCGG CGCCAAGTTC TGA
|
|---|
| Protein sequence | MKNHRTVSTL PPRSLLYCTL AASLLAANPA MAQSSNATLR GQVASAQSGS EVVVTNIATG
SVRRAPVNAN GNYTIVGLQP GTYKVESNGI SRTVTLSVAS SATVDLGNET AAAPAGDATT
LDTVTVNAPM MREVKTSEVG NTVSLRQIQQ LPQATRNFLE FADTVPGMVF TIDQDGNTKL
RAGASNASSS NLYIDGVSQK SYVSGGGIAG QNETQGNPFP QLAIGEYKVI TSNYKAEYGQ
ISGAAITAAT KSGTNQFHGE AFYRFTNQDL RKERPDEENG KVDSQTKEYG LAIGGPLIQD
RMHFFFAYEG KDNVAPKSVQ PSAEASPFVG LLPSNLRDQF GASNMPFTED LYFGKIDVEP
TDNDRIELAT QYRDETQVSN VGGQNAPDRA VDKINKDKRT SLRWQHSADS WFNEAIITTE
DSSNVPTPRG TGNGSIYTYV DRTEADPRQW VFLNTGAASG EDFKLRSQKG WSFQNDLTFN
ALEWHGEHTI KTGVTYRDIK LTSRESSSLN PQLSYEVSQN GIAPVPFQVR YIRAFDNPGQ
VPVVESPSKQ YGIYLQDDWA VNDKLMLNIG MRYDYEDTQA YTDFVTSQPF INALYSDDPD
NPGQPWANRL VPSGINVADY ISTGNNRKNF KDAWAPRFGF SYDFFGDESA VLHGGAGRSY
DRNLFEQLAL ESVKAALSPV VVYFSDAASR QPCFRDDRVC TAWNPGYLNG IDQLNTIPGT
NDSSELFMFN NKLKTPYSDQ YSIGISNQVG DWLTDVTFQR VLAYDGLVMS LVNRYPNGAY
FDSTGSVPWG EPVPGYRNTI LGYNGLEQRS SQFLLSAEKP YTKESGWGLN LSYTHTSARQ
NRTIDEPFAF DKATIRDYPF VKSDAVAAHR FVASGSIDGP WGVTFGAKLI LATPEPINTI
ACYGFTDPDG GTCQAVGVTP PGNGKFLVGG KIWGYRTVDL QANKEFTVVG DFKLNARINV
LNAFNFKNYT QYQYNSFGSD GRLQPDITVV DNGEISYVPR SVVLEIGAKF
|
|---|
| |