| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_03573 |
|---|
| Symbol | |
|---|
| ID | 6303808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 299626 |
|---|
| End bp | 301698 |
|---|
| Gene Length | 2073 bp |
|---|
| Protein Length | 690 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642637597 |
|---|
| Product | tetratricopeptide repeat family |
|---|
| Protein accession | YP_001911482 |
|---|
| Protein GI | 188574553 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.432087 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGACG CCATTCTTCA AGCCCTGCGC CGCAATGCGG CCGACGATGC AGTGGCGCTG
GCCCGCGAGT GGGCAACCGC CGCGCCCGAC GACGTCGCCG CGCACCGCTG GCTGGCGGTG
GCGCTGCAGC AGCAAGGGCA GCCGGGGCTA GCGCTGGGCA GCATCGACAC CGCGCTGATG
CTGACCCCCG AAGATGCCGA CCTGCATCTG CTGCGTGCCG GTGCGTTGTT GGCGACGCGC
GATCTGTCTG CCGCCGATGC GGCGCTGTCG CGCACTACCG CGCTGGATCC GAATCAGTTC
AATGCTTACG TGATGCAGGC GCATCTGGCG GTGGCACGTG GCGATCTGGA CGAGGCCGAG
CGGCTCAGCC GCACTGCCGC GCGCCTGGTG CCGGAGCATC CGCAATTGCT GGCGGTCGAT
GGCGTGGTGG AGATGCGCCG CAGCCAGAGC GACCGCGCGC TGTCGTTGCT CACCCGCGCC
GCCGAGCAGT TGCCCGACGA TGCACGCGTG CTGTTTTCGC TGGGCTTTGC GTATCTGCAG
AAAGAGCATT TTGCATTCGC CGAGCGCGCG TTCGAGCGCG TGATCGAGCT CAATCCGCCG
GGCACCGCGC TGCGCGCCTT CATTGCCCAG CTGGCCCAGC GCCAGGGCCG TCTGGACGAC
GCGCTGGCGG CGATGCAGGG CGTGCTCGAG CAGCCCGGCG GCGATCTGCC GGCCATGCGC
CGGCTTGCCG GCGAGATGGA ACTGCAGGCC GGTCGCCCCG ATCAGGCCGC CGCCCATCTG
CGCCTGGCAC TGGCGCACTG GCCGGCCGAC CGCCGCACGC TGCATGCGCT GCTTACCGCC
TGGGTGCGGC TGGGCGCGGT GGACGATGCG CGCGACACCC TGGATGCGGC GCTGGCCACG
TCGGCCACGG CGCACGACCT GTGGCTGGCC CGCCTGGCGG TGGAGCCGGT CGGTGGGCCG
CAGGCGCAGG CGGTGATCGA GCGCTGGCTG CTGGCCATGC CCGAGCACCT GCCGGCGCTG
GAGGCGCTGA TGCGCGTGCA TGACATGCAG GGCCATGGCG ACGCAGCGGA GATGGTGGCG
CGCCAGATCG TGGCGGTGGA GCCGGGCCGC ATCAGCGGCG AGCAGCGCAT TGTCGAAGCC
TTGCTGGAGC GCGACCCGCT GGCGGCCATC GCCTGCGTCG AATCGTTGAT CGAATCGCTG
CCTGCGCCGC AGCAGACCGT GCTGCGGCCG TGGCTGGGCA ATGTGCAGGA CCGCGCCGGC
CAGCCCGATG CCGCCGTGGG CACCTGGATG CAGTTCCACC GCGAGCAGGC CCAGCACCGG
TTGCCGTTGC CGCCGCAGGC CGCCAAACAG CCGACGCAGT GGCCTGCGCT GGTGACCATC
CCCGACACCG TCACCGCGCG CCCGCTGTTC GTGTGGGGCA CGCCCGGCTC GCATGTCGAA
CGTTTGATCG CGGTGATGGA CGCGGCCACC CCACTGGTGC GCGGCGACCG CTATGGCACC
ACGCCGCCGT CGGATGCGCT GCAGAGCTAC CGTACGCTCG ACCAGTTGGC CTCCGGCGAA
CTGGCACCGA CGGCGCTGGT GGAAGGCTGG AAAGCACAAC TGCCGCGTCG CGGCATCGAC
GATGGCAACG TCATCGACTG GCTGCTGTGG TGGGACAACA CCTTGTTGAC CGCGCTGCGC
CCGCATCTGC CTGAGGGCCG GCTGGCGATT GCGCTGCGCG ACCCGCGCGA CATGCTGCTG
GACTGGCTCT CGGCCGGTGC GTCCGCGCCG CTGGCACTGC AATCCCCACA GCAGGCCGCC
GATTGGTTGC TGATCGCGCT GGAACAGCTG GCCGTCTTGC ACGAACGCGA TCTGTACCCG
CACCGGATCA TTCGGCTGGA CGGTATCGAA AACGATCCGC AGGGCATTTC CACCGCGCTG
GAACAGGCGT TCGGGCTGAA CTTCCCGCTG GTCGAACCGC GTGGCCCGAC GCGGTTGGCT
GCCGGTCGCT GGCGCAATTA CCGCGGCGTG CTTGGCGCGC AGTTCGATCT GCTCACGCTG
ATTGCCGTGC GCTTCGGCTA CCCGCAGGAC TGA
|
|---|
| Protein sequence | MQDAILQALR RNAADDAVAL AREWATAAPD DVAAHRWLAV ALQQQGQPGL ALGSIDTALM
LTPEDADLHL LRAGALLATR DLSAADAALS RTTALDPNQF NAYVMQAHLA VARGDLDEAE
RLSRTAARLV PEHPQLLAVD GVVEMRRSQS DRALSLLTRA AEQLPDDARV LFSLGFAYLQ
KEHFAFAERA FERVIELNPP GTALRAFIAQ LAQRQGRLDD ALAAMQGVLE QPGGDLPAMR
RLAGEMELQA GRPDQAAAHL RLALAHWPAD RRTLHALLTA WVRLGAVDDA RDTLDAALAT
SATAHDLWLA RLAVEPVGGP QAQAVIERWL LAMPEHLPAL EALMRVHDMQ GHGDAAEMVA
RQIVAVEPGR ISGEQRIVEA LLERDPLAAI ACVESLIESL PAPQQTVLRP WLGNVQDRAG
QPDAAVGTWM QFHREQAQHR LPLPPQAAKQ PTQWPALVTI PDTVTARPLF VWGTPGSHVE
RLIAVMDAAT PLVRGDRYGT TPPSDALQSY RTLDQLASGE LAPTALVEGW KAQLPRRGID
DGNVIDWLLW WDNTLLTALR PHLPEGRLAI ALRDPRDMLL DWLSAGASAP LALQSPQQAA
DWLLIALEQL AVLHERDLYP HRIIRLDGIE NDPQGISTAL EQAFGLNFPL VEPRGPTRLA
AGRWRNYRGV LGAQFDLLTL IAVRFGYPQD
|
|---|
| |