| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_03554 |
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| Symbol | |
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| ID | 6303827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 317423 |
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| End bp | 321091 |
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| Gene Length | 3669 bp |
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| Protein Length | 1222 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642637616 |
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| Product | hemagglutinin-like protein |
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| Protein accession | YP_001911501 |
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| Protein GI | 188574572 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACGCTGA GCCAGACCAA TACCTCGGCG ACCACGGTGA ACCTGACGCG CAGCGGCACC
GCGACCAGCG GCACCGACTA CACCGGTGCG GTCACCAGCG TCATGGTGCC GGCCAATACC
GCCTCGGCCA GCTTCAGCGT CACCCCGGTC GCCGACACCA CGGTGGAAAC CGACGAGACG
GTGACCTTCC AAGTGGCCAG CGGCACCGGC TATTCCACCG GCAGCCCGTC CAGCGCCACG
GCCACCATCG TCAACGACGA TTTCCCTTCC GCGAGCATCG CCGTCTCCCC GGCCAGCGTG
ACCGAGGACG GCGCCACCAA CCTCCTCTAC ACCGTCACCC TGAACCAACC GTCGCCCACG
GCGCTGTCCA TCGGCTTTGG CGTGGGCGGC ACCGCGACCT CGGGCACCGA CTATGCGGCC
GTGAATTCGC CGCTGGTGAT CGCCGCCGGC CAGACCACCG GCACCATCAC CATCAATCCG
ACCGCCGACA GCACGGTCGA GCCCGACGAA ACCGTGGTGA TCAGCCTCAA TGCCGGCAGC
GGCTATACGG TCGGTTCGCC GAACAGCGCC ACCGGCACCA TCCTCAACGA CGATGCGGTG
GTGACGATCT CACCGGCGTC GCTGCCCGCA GCAACCGCAG GCAGCGCGTA CAGCCAGACC
CTGAGCGCCA GCGGTGGCAC CCCGGGCTAC ACCTTCGTGG TCAGTGCCGG TACGTTGCCG
GCCGGACTGA CGTTGAGCGC AAGCGGGGTG CTGTCCGGTA CGCCGACCGC CAGCGGCAGC
TTCAACTTCA CCGTCACCGC GACCGACAGC GGGGCGCCGA CCAGCGGCAG CCGCGCCTAT
ACCCTGACCG TGGCCGGCGC CAACGTGACC TTGCCGGCCA CCACCTTGCC GGCCGGCACC
GCGGGCCAGG CCTATTCGAG TGCGATCACT CCGGCCACCG GCGGCATTGC GCCCTACAGC
TACGCGCTCA CCGCCGGCGC GTTGCCCGCC GGCATCACGC TCAACACCAG CAGCGGGACG
TTGAGCGGCA CCACCACCAG CGTGGGCAGC GTCAACTTCA CCGTCACTGC GACCGACAGT
ACCAGCGGCA CGCCCTCGCA AGGCACGCGC GGCTATACGT TGAACATCGC CGCGCCGACG
ATTGCGGTGG CGCCGTCCAC GGTCCCCACC GCAACACGTG GCACCGCCTA CAGCCAGACG
CTGACCGCCA GCGGCGGCAC GGCGGCCTAC ACCTACGCGA TCACCAGCGG TGCATTGCCG
GCCGGCATCA CCTTGGCCAG CAACGGCACC TTGTCGGGCA CGGCCACGCT GGAGGGCACG
TTCAACTTCA CCGTGCAGGC CACCGACGCC AACAGTTTCA CCGGCACGCA GGCCTACAGC
CTGACCGTGG CTGGCCCGAA CCTGGTGTTG CCGGCGTCGA CCTTGCCGGC AGGGACCGCC
GGGCAGGCCT ATGCAGCTGC GATCGCCCCG GCCACCGGCG GCACGGCGCC GTACAGTTAT
GCAGTCACTG CGGGCGCGCT GCCGGGTGGC GTGGTACTGG ACGCTGCAAC CGGCGGCCTC
AGCGGGACGC CGACGGTGTC GGGGACCTTC ACCTTCACCC TGACGGTCAC CGACAGCACG
CCCAGCCCCG CCGCGCAGGC CAGCCGGAGC TACGCGCTGA CCGTCAACGC CGCAACGCTG
GTGCTGGGGC AGCCCACCTT GCCGGCGGCC GTGCGTGGCA CCGCCTACAG CCAGGTGCTC
ACCGCCAGCG GCGGCATTGC GCCATACCGC TACAGCATCG CCAGCGGCAC GTTGCCGGCC
GGATTGACGC TGGCCAGCGA CGGCACGTTG TCGGGCACGC CAACGGTGCA GGGCACCTCG
TCGTTCACGA TTGCGGTGGC CGATGCGGGC AATGCCACCG CCACGCAGGC ATACACCTTC
ACCGTGAACG ATGCGGCGCC GGTGGCGGTG GCCGATGTTG CCGCCACCAT GACCGACACC
GCCGTGACCG CAGCGGTCAC CGCCAACGAC ACCGGCAGCA TCACCGCGAT CGCCATTGCC
AGCGCACCCA CCAACGGCAC GGCCGTGGTC AGCGGGCTGG AAGTGGTCTA TACGCCGAAC
GCCGGCTTTA CCGGCACCGA CGTGCTGAGC TATACCGCCA CAGGCGCAGG CGGCACCTCG
GCCGCGGTGA CGTTGACCAT CACGGTCAAC GTGCGGCCGG TGGCGGTGTC GGTGACTGCA
GCGGCAGTGC CGGGCGAAGC GCAACGGGTG GACATCACCC GTCACGCCAC CGGCGGGCCG
TTCGTGGCCG CTGCGGTGGT TGCGGTACTG CCGGCCTCGG CCGGTACCGC CACCATCACC
CGCGTGGGCG GCACTGCCAC TGCGGCGGCG GCGCGTGCCT CCGGCCTGTC GCCGGCAGCC
ACTGCAATGG CCGAAGCGCC GACCTTTACC CTGACCTTTA CGCCCAACCC GGCCTTCGTC
GGTCAGGCCA CGGTGCAGTT CACCTTGTCC AACGCAGTTG CCACCTCGGC CCCGGCCAGT
GTGGTGTTCA CCATCGCGCC ACGGCGTGCC CCGAGCGTGG ATGCGGAAGC GCGGGGCCTG
ATCGATGCGC AGTCCGAGTC CACGCGGCGA TTTGCGCGGG CGCAGATCGA CAACTTCCAG
CGCCGCCTGG AGGCCACGCA TCGCGGCGGT GGCAGCTTCA CCAACGCAGT GAGCTTCCAG
CCGACCTCGC ACTGCCGCCA GGCCGAGCGC GGCATCAGTG GGCAGCTGTG CAGCCCGGAC
ACGCAGGACG CCGACAACGA CTTCCGCGAC GCGCCCGCAG TTGCCAGCAG CACCGGCAGC
AGCGCGCAGA CGCCGGGCGA CCTGGGTCTG TGGGTGGGCG GCGCGATCCG CTCGGGCAGC
CTGAACCGGC AGACCAACAG CAACGGGGTG GAATTCCAGA CCGATGGGTT GAGCGTGGGT
GCCGACTACC GTGTTGCCTC GTCGCTGGCG ATCGGTGCGG GCCTGGGTTG GGGCCGCGAC
GACAGCGATG TAGGCAGCAA CGGCAGCCAT AGCAAGGCCA CCGCCTACAC GATGGCGTTG
TACGCCAGCT TCCGTCCGGG CAAGGCGTTC TTCTTCGACA CCTTGGTCGG CTACCAGATG
CTGTCGTACG ACCTGCGCCG CTTCGTCACC GACGACAGCT CGCTGGCCGA GGGCAACCGC
GACGGCAAGC AGTGGATCGC CTCGCTGTCC ACCGGTGCCG ACCTGCAACG CGGCACGCTG
CAGATTACCC CGTACGCCCG GGTGGATGTG GCTCGCGCCA CGTTGGATGG CTATGCGGAA
GAGGGCGTGG CGCCGTTCGC CCTGCGCTAT GCCGACATGG ATGTGGCCAC CACCACCGGT
AACCTCGGTC TGCGTCTGGA GTGGCGTCGC GAAGTCGCTT GGGGACGACT GAGCCCGCAG
TTGCGCGTGG AATATCAGCG CGACTTCCAG GGCCGTGGCG ATGCGATCCT GAGCTATGCC
GACCTCACCG GTGGTCCGTT CTATCGCACG GCGCAGAGCG CGTTCGACCG CAACCGGTTG
ATGGTGGGCA TCGGTGCGGC GCTGCTGACC GAACAAGGCC TGTCGACGCG GCTGGAATAC
CGCGGCATCA CCGACGGCGA CAGCAACAAC GATCAGACCT GGATGATCAA TCTGGAAAAG
AAATACTGA
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| Protein sequence | MTLSQTNTSA TTVNLTRSGT ATSGTDYTGA VTSVMVPANT ASASFSVTPV ADTTVETDET
VTFQVASGTG YSTGSPSSAT ATIVNDDFPS ASIAVSPASV TEDGATNLLY TVTLNQPSPT
ALSIGFGVGG TATSGTDYAA VNSPLVIAAG QTTGTITINP TADSTVEPDE TVVISLNAGS
GYTVGSPNSA TGTILNDDAV VTISPASLPA ATAGSAYSQT LSASGGTPGY TFVVSAGTLP
AGLTLSASGV LSGTPTASGS FNFTVTATDS GAPTSGSRAY TLTVAGANVT LPATTLPAGT
AGQAYSSAIT PATGGIAPYS YALTAGALPA GITLNTSSGT LSGTTTSVGS VNFTVTATDS
TSGTPSQGTR GYTLNIAAPT IAVAPSTVPT ATRGTAYSQT LTASGGTAAY TYAITSGALP
AGITLASNGT LSGTATLEGT FNFTVQATDA NSFTGTQAYS LTVAGPNLVL PASTLPAGTA
GQAYAAAIAP ATGGTAPYSY AVTAGALPGG VVLDAATGGL SGTPTVSGTF TFTLTVTDST
PSPAAQASRS YALTVNAATL VLGQPTLPAA VRGTAYSQVL TASGGIAPYR YSIASGTLPA
GLTLASDGTL SGTPTVQGTS SFTIAVADAG NATATQAYTF TVNDAAPVAV ADVAATMTDT
AVTAAVTAND TGSITAIAIA SAPTNGTAVV SGLEVVYTPN AGFTGTDVLS YTATGAGGTS
AAVTLTITVN VRPVAVSVTA AAVPGEAQRV DITRHATGGP FVAAAVVAVL PASAGTATIT
RVGGTATAAA ARASGLSPAA TAMAEAPTFT LTFTPNPAFV GQATVQFTLS NAVATSAPAS
VVFTIAPRRA PSVDAEARGL IDAQSESTRR FARAQIDNFQ RRLEATHRGG GSFTNAVSFQ
PTSHCRQAER GISGQLCSPD TQDADNDFRD APAVASSTGS SAQTPGDLGL WVGGAIRSGS
LNRQTNSNGV EFQTDGLSVG ADYRVASSLA IGAGLGWGRD DSDVGSNGSH SKATAYTMAL
YASFRPGKAF FFDTLVGYQM LSYDLRRFVT DDSSLAEGNR DGKQWIASLS TGADLQRGTL
QITPYARVDV ARATLDGYAE EGVAPFALRY ADMDVATTTG NLGLRLEWRR EVAWGRLSPQ
LRVEYQRDFQ GRGDAILSYA DLTGGPFYRT AQSAFDRNRL MVGIGAALLT EQGLSTRLEY
RGITDGDSNN DQTWMINLEK KY
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